Ccap011535.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:1944231-1959599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.029 1.5 8.9 2.3 1 23 1821 1844 1821 1844 0.96 2 13 0.47 24 5.1 1.1 1 23 2022 2044 2022 2044 0.94 3 13 0.00022 0.011 15.6 2.5 2 23 2047 2068 2047 2068 0.97 4 13 2.1e-05 0.0011 18.8 0.2 3 23 2076 2096 2074 2096 0.98 5 13 3.4e-06 0.00017 21.3 3.7 2 23 2103 2124 2102 2124 0.97 6 13 6.4 3.3e+02 1.6 0.4 5 23 2137 2155 2135 2155 0.96 7 13 1.6 81 3.5 5.4 3 23 2162 2183 2160 2183 0.93 8 13 0.073 3.7 7.7 0.4 2 23 2194 2214 2193 2214 0.96 9 13 6.4e-05 0.0033 17.3 1.2 1 19 2220 2238 2220 2242 0.94 10 13 6.8e-06 0.00034 20.4 1.2 1 23 2250 2272 2250 2272 0.98 11 13 0.00012 0.0062 16.4 7.6 1 23 2278 2300 2278 2301 0.96 12 13 0.0011 0.057 13.4 6.5 1 23 2306 2328 2306 2328 0.98 13 13 0.0021 0.11 12.5 5.8 1 23 2334 2356 2334 2357 0.96
Sequence Information
- Coding Sequence
- atgggGGAAAACGTACAATGTCCAGTATGCACACTCTTTCTGCATGCTGGCATGAATCTATCCGATCATTTAGAGACACATCCTAAAGAGCAAGTAATTAAGGCACTTGTACAAATGACCATTTCGGGGAGTGGAGGCAGTGCTGCCAGTACTGCGCTTGCGGCATCTCTCAGTGGAGCTAGCACAGCGAAAACTGATAAAGATGAGAAGCCAGTCGTGGCACGGGTCGCTACAGTCGCTACAGATTCCGAAACAGTCAACAGTACTGCATCGGCTTTTGCAGGACAAACTGCAATAAATAGTCAAAACTTTGCAGCTGCATTTAGTGGAATATCAGCGATCACTAAACCGTCGACATCATCATCTGCAAGTACTGTAACAATTTCAACAACTGCTAGAACTCCCGTTGATGTTGTGGCCGTACCCGCAAAGCCCGCAGCTGTGGTGGAAGATAGTGCAACGGTTAAGTCGAATGATGTTAGTGGGAGCAAGGCGGTTAAAATTTCACACGTAGCCTCCTTGCAGGTGGTAAGCGACGCTGGGCAAGCACAGGCTCAAGGTCAATTTGACAATTACACGGCGAACCGTTACCACCAAACACATCAAAAACAATTAGCATCAAGTCAATTAGAACAGCGGCATCTTCACCAACAGAcacaacaacggcaacagctgcagcagcaaaagcatcatcatcatcatcatcagcagcagcagctgcagcagcagcagcagcatcagcagcaacaactacaacagaaacaaaaacaactatctGTGGATAATGCAAGCACAAATATTGGACCTGCTCAGCAACGAAGCATATTGCCACCGCCACCCCCACCAACAATGGCTTCGATTCCACTGGTGGTCGGAcaagtgcaaaataaattattacatcCAACGCATACAACCACTACACTATATGCAAATAATGTTGCATCAAATCGCCATGTTCAAATGCATCCGATCCAGCAACAACCGCATCAACAGCTTCAACATCAGTATCCTCAGCAGCAACCAACACACAATCAGCagccacagcaacagcaacagcaacagcagcagaatcttaaaatatattattcaacaGCGTTACCCGCACCACCGCCTTCTCTGCAGCTGTTCCCATTTCACGCATCAGCCCAAATGCAACATCAAAAACCACCGCCTGCTTATGGTACTGCGATAAGTCAAATTCGATCTCaaaataaccaaaacaaaagtaaacatGTGAGTGTGGAGAAAAACCTCATGCATCCACAATCGCAACAacaccatcagcagcagcagcgtcatcaccagcaacaacaacaaaatcaacaacaacaacaaaatcaacaacagcaacaacaacaaaatcaacaacagcaacaacaacaacaaaatcaacagcaGCCACCACATCACCAGTCGCAGCTAACACGTCAAATTCAACAGCGTTCCTCAATGACATCAGCGCAGTCACAAGCGACAAGCAATTTGTCAACATCGCTACTGCTACATCAGCATAATCAACAGCATACCATTGGAAGTGTACCAAACCTGAGCGTAAAATCTGTGAGCGGAACGAAACCAACTGAATTGCTTCCCCCACCGCCACCACCTACACGTGCATCAAGTAATTTGCAACCACTCCATCAACAAATACCACTTTCGTTACAACATTTTGGTATACCAATCAAATCCATCCCAACCGTACAACGCATTACAACAACGTGCACCGACACGACCGCCTCAACAACTAATCCAACTTGTACTCCTGCCAGTACCGCTGCAACATCTGTATCCTCGGCTCCAGTTAATATGCAAATGACAACTGCTGTCGGTGTAAGGCAAATATCTTCTCCATACAATTCACTGCTATTGTCGGCAACTCAATCAACTTCATCCAGTTCAGTACTGCGTTATGCTGAATCGCCGGTAGCACATTATTTGGAACGTGACAATGGTGATTTCATAGTACAAGAGACTCCAAAACATATTGTTGAATGTGTCGAGAAGGATAATGGCGAATTTTCGGTGATTGAACGTATATATCAATCGCCATTAAGTGTATTACATATACACGAAGATGACGAaatggatgatgatgatgatgaagaggaCGATGGTGATGAAGATAGTGATAGGAAAGACAACGATAAAAAGAAGGTTTCAACAACAGCCGATGAACTAGCGAAAACAAATGACATTGTTGTACCTATGGATATTGAAAGCGATGGAGGAACCCAATCTAATGTAGAGGAAAAAAACGAACGGCCTCGCTCGAGTGCTGTATCAGCTGATGGAAAGGTACAAACAAAAGTGCATGTGGGCAATGATAAGGCTGAAATGACAAGTCCaaacagtagcagcaacaataatacaAACTGCGATAAGTCCACATCTTTAAATAATACGTCTAGGCGTTTAAACAACGAGACCGCCTCTGCATCAAATTCTCATTCAACAAATGTTAATACCAGCGACTCCAATGTACCCAGTTGCTCAACAACCAGTTCCAGTTCCAGTTCAGCGGGTTCGTCGCGCAAACGCAACTCCAAAAACACAATAACTGTATTGAGTGATGTACAATTGAATTTGGATGAATATCTGGATTTGGTTGGAAATATAATAGCATCCagtaaaataacagaaaaaatgagTACATTATCAGGCGCAATGCCTATACCTTTGTTGAAAGTTGAGAAAGAAGAGCCACCTGATGACTACGAGATGCCCCAAAATGAAGAGGAAGAACAACAAGAATTTGACGAACAAAAAGATAAGTACTTTGAATCACCAGACAAATTTGATGAGTTTCACGCGCCAACCGTAATTGAACCACCTACAATCGCCAACAAAAATGAGACTGAAAATatagttgaaaataattgtagTAGCAATAAGGTTAGATTAAATGACAGTGACATTGACGAAAAGGACGCCAGCGCTGCTGTGCCTGCAACGACATCCACCAAAGCTGCGGCAAAATGCTCGAGTCACGTGACCAGTGTTATACGCATGGCTACAACTagtcagcaacagcaaaaacagcaaTCACAAAAGGATTTGACGCAACATGCCACGCTAGCTCCAGGGTTAACAAGAACACaatcacaaaatatatttaacgatGAGTCGACAGCATCATCACAACCACAAGTGACATCAATAATTATACAAGATTTATCGCGCCAGCATATCATACAACTGCAGGAGGAGAAGCATGCACAGAGCgagcgacagcagcagcagcaacagcaagaacagGATGATGTGCAAGACCGAAGTGGTTTCTCGCAGcagaagcaacagcaacagaaaataGAAGCGAGTTTGGTGGAGACGCAAGCGCCACTGACGACATCACTGCCAGTACAAAAGAGAGGCCCAAAGAAGCTGATTATCAAGCCAAAAGTAACAAAGACTGATGCAAATGCTAAcctcaataacaacaacaacaacaaaagcaacaactttAATTCCATTAATAATAGAGAAACGTCCCAATTAATTACGGAAGAAGCAAATAGCGAACAACCTACAACATCTACAAAAGCACAACAGGAATTGCAAGAGAAAATAcacaagaaacaacaacagcaaggagATCAACCCACACATAATGCAATTGTACAGAAGCTGATAAAAAGTGAACCGACGTCATCAGCTTACGACAATAGAATTGGCATGAATGGAAATAACTTGAGTCTCAGTATACTGGAAAGTCATTTAACCGCAAATCCTGAAAATTTTATACCGATTGTACAGTGCAAGACCGAAAAGGAATCCCAACAAACAACATCATATTTGCAACCATTCAAGGAAGAAGTTAAAGAGATTACTCATTCCAATGACAATGCGGCCGCGACTGATGACGCACATGTTTTATTAGACTTTGCCAATTCAAAGAAACACGATACGCTTAATACCAGTGGCGCCAATTTCCTTTCCGCCACCTCGATATTCTCAAACACATCGAAAATAGCGAAAGATCATCAGAAGCCAGCAGCGAGTGTGgctaatataaatacaaatagcgACGAGTCACATGCAGCATTGCGTTGCGAAGATGAGTTTATTGCACACGATGAAGTGCAAGAAATCGTAATTTCATCCTCGTATTCACAATCGCAGTCGGCCTCCGATATACCCACTACTGCCACCAATAGTACCACCGCCACCAACACTTCGCATGCTAAAGATCGAAATATTGCCcagcaacatcatcatcaacaacaacaacaacaacagcaccatcAGCATCATCACCACCAACCGCAATTAAATCACAATTTCACCGATTATCCCTTCAGTTTTCTTTATGGTCATGGTGGCCCGATCGGCGGCGCAGGCGCCGGTAATGGTGTACAACAAACAGATACCAAAGGTGGTAACTTCTCAGCCATATATCAACAAGCAGCACAAGATGCCACCACCGCTGCAACACTTGCTTCCGGTAGTAATACAATTCATACGGACGAGTCCACCAGTTCAACTCAACAGCAACAAACCCATACCAACCACTTTGGTGGGGTACACAGCGCTAGCGGCTGTGAAATAGGTGCATCACATGCATCGCATTGGTATCATCATGCGTTGAGTACGGCAAATGCAGATTTTGATGCTGCTCTAGCTGTTGATTGTAATGCAGCCGTAGATGGCGCTGATGTCGGTAAATACTTGGATTTGGATACTTGTAAACGAGAAGTTTTGGTTGGTATGCCTGCAGCGCCATCTTCGACTTCTTCATCGTTCGCTGCGGTCACGGAGAGTAGCTTGGCTGGCGGTTGTACAGCGGACGCACTTAATATACGCACAGATGAAAAGATGCCGGCAAAGGGAGAGATTTCTGGACAGGAGAGCAATTGCGATATTGAAAATTCCTGGAGTCAACCGatgtaTGGTGAAATTTCTGCGCGTTTCTTTAAAACAACTTTTCCTGGAATATTTCAACACGAAAATGGTTGGAACCACGATGAGTATTTCACTGTACAGGATCTAAGTGCTTCGGCTGCTGCAACTGGTGCGGGTCGATCAGCCAAAAGCTTTGATTTTCGTCTTCCTTTGGAAGCCACTACCTCAGCTGCAGCAAATGGTGCTAGTGGTAACTTCCAGCTTTTTGCACGACATACCGATGCATTACCATCCACTTCATCTgctaataaaatgaagaaacgaAAGCGGGATAGTCATAGTGGTAATGGCAGTAGCATGAGCAGAGTGGAAAAAACGCCAACGTCGCGCATTCAACCAACTGCTACAATTACATCACAACAGCTGTTATTGCATCAACCTCAACAAAATCAAGCGCAAAATACGCAAGAACCATTACAACAATCGCAACAAAGCGTAGATTCTGCAATTTCCGCAACATTTTTGGCTGGCAGCACATCAAGCGCAGCTGCTGCTGTAGCTCCCAATGCTGACAACACTGCTTTGATCGTAGAACAGAGACGACCACGCAAGAAAGTCTATCAGTGCACTCATTGCACAGCCGAATTTTCGAAGCTTAAGGATCGTAATTCCCACATGATTTTACAACATAATTATGTGCGTCAAAATCGACGTTTGATATGTGTTCAACGCTCGGATGCGGCTGCGGCTGCATCATCTACTACCAACGCAATTCACAGCGGTGATGTTGACAATGTGGTGGTGGTGAATATGGCCGATGGTTGCAGTAGTTCACTTGTGCGTTCAGATAGCATGGAATTCATTGAGGACTCTAAACAGGGTATTGTAAAAATTGAGGTTGATCATGCGTACCATTCATTAAGTGCTACGGCCGCGCCACCAGCAGGTAGCGGTGCAGGCATTGATGCCAAGCTAGAACTGATGGACGACAAACAAAGCATGGCATTAGTGCCTGTAAATGGTGCAAACGTAAATGGTGAAGGCGAAGGCGGCACTGGCGATGCGGTGGATACAAAACCGCTAATCCAACCGCTCGCGCTAACTACACCAGCCACGAAATTGGCTGCACTCTACCGCATGTTGGTCTCCTATAATATATCCACGCTGAAAGACAGCCATAATCTTAGCGAAATGGAACAGAAACTCATTGAACAATCCATATTCTTCTGTTACGTTTGTCGACGAAACTTTACATCGGTCAAATTGTACGATGCACACTTAAGCGAACATCCTGCCGAATGTTTTACATGTGGCAAAACGTTTCAGCGTTGGAAGAATTTTTCGTTACATTTGAAACGGCACTTGGGTTGGAAAGAATTTGGTTGTAATGTTTGTGACAAGAAATTTGTAGTGCGGAGCGCATTAGTTGAGCACATGCGTATGCATACTGGACATACGCCACTGAAGTGCAAAGTATGTGgcaaatattttaaacgctATTCGAATTTGACTCAACATCGTAAACGACACGGTAAACagattataagaaaaaaagaatatgttTGCCATTGTGGTGAGGTATTGCCATCAAAGGCGCGTTTCCTTTGGCATAAAGAAACCCACGACGCCAAACCCAAATGTTGCCCATATTGCTGTGATCGTTTCGTGCATGCCAACTCCTTGCGTCGTCATATACGTTTAGCCCATTCCGATAAGTTTGACTATGCCGAACCCGTGGAGTGTCCATTGTGCAAGCATACCTTTGCCAAATCCTCAATTAAGGCACACATAGCAACACATTCGATGGATACCCAACACGATTGCACCATTTGTAATAAATCATTCTCGACAAAatggaatttgaaaattcattcatGGGTGCATGCTAATCGCACATCGAAACCATTCAAATGTGAACACTGCCCAAAAGCGTTTGTCCGTGAGGTGGATTTCAAGAATCACATGAATGCACATAAACAAATCAAGCCGTATACATGTGAGTATTGCGGTTGTAAATTCATAAGGAAATACAATTATATGCGTCATCGACGCGAACATCATGGCAACAAGAAGTTCACCTGTGACCTGTGTAAAAAATCCTTCCATCGTCATTATTATCTCATCGAACATCGACGTATACATACAGGCGAACGGCCATTCCAGTGCAGCATATGCGGCAAAAGTTCCACAACGAAAACCAAtcataataaacatttaaaaatacatcattCACGTGATCCCTTCACGGTTGAGGcgtaa
- Protein Sequence
- MGENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTISGSGGSAASTALAASLSGASTAKTDKDEKPVVARVATVATDSETVNSTASAFAGQTAINSQNFAAAFSGISAITKPSTSSSASTVTISTTARTPVDVVAVPAKPAAVVEDSATVKSNDVSGSKAVKISHVASLQVVSDAGQAQAQGQFDNYTANRYHQTHQKQLASSQLEQRHLHQQTQQRQQLQQQKHHHHHHQQQQLQQQQQHQQQQLQQKQKQLSVDNASTNIGPAQQRSILPPPPPPTMASIPLVVGQVQNKLLHPTHTTTTLYANNVASNRHVQMHPIQQQPHQQLQHQYPQQQPTHNQQPQQQQQQQQQNLKIYYSTALPAPPPSLQLFPFHASAQMQHQKPPPAYGTAISQIRSQNNQNKSKHVSVEKNLMHPQSQQHHQQQQRHHQQQQQNQQQQQNQQQQQQQNQQQQQQQQNQQQPPHHQSQLTRQIQQRSSMTSAQSQATSNLSTSLLLHQHNQQHTIGSVPNLSVKSVSGTKPTELLPPPPPPTRASSNLQPLHQQIPLSLQHFGIPIKSIPTVQRITTTCTDTTASTTNPTCTPASTAATSVSSAPVNMQMTTAVGVRQISSPYNSLLLSATQSTSSSSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKDNGEFSVIERIYQSPLSVLHIHEDDEMDDDDDEEDDGDEDSDRKDNDKKKVSTTADELAKTNDIVVPMDIESDGGTQSNVEEKNERPRSSAVSADGKVQTKVHVGNDKAEMTSPNSSSNNNTNCDKSTSLNNTSRRLNNETASASNSHSTNVNTSDSNVPSCSTTSSSSSSAGSSRKRNSKNTITVLSDVQLNLDEYLDLVGNIIASSKITEKMSTLSGAMPIPLLKVEKEEPPDDYEMPQNEEEEQQEFDEQKDKYFESPDKFDEFHAPTVIEPPTIANKNETENIVENNCSSNKVRLNDSDIDEKDASAAVPATTSTKAAAKCSSHVTSVIRMATTSQQQQKQQSQKDLTQHATLAPGLTRTQSQNIFNDESTASSQPQVTSIIIQDLSRQHIIQLQEEKHAQSERQQQQQQQEQDDVQDRSGFSQQKQQQQKIEASLVETQAPLTTSLPVQKRGPKKLIIKPKVTKTDANANLNNNNNNKSNNFNSINNRETSQLITEEANSEQPTTSTKAQQELQEKIHKKQQQQGDQPTHNAIVQKLIKSEPTSSAYDNRIGMNGNNLSLSILESHLTANPENFIPIVQCKTEKESQQTTSYLQPFKEEVKEITHSNDNAAATDDAHVLLDFANSKKHDTLNTSGANFLSATSIFSNTSKIAKDHQKPAASVANINTNSDESHAALRCEDEFIAHDEVQEIVISSSYSQSQSASDIPTTATNSTTATNTSHAKDRNIAQQHHHQQQQQQQHHQHHHHQPQLNHNFTDYPFSFLYGHGGPIGGAGAGNGVQQTDTKGGNFSAIYQQAAQDATTAATLASGSNTIHTDESTSSTQQQQTHTNHFGGVHSASGCEIGASHASHWYHHALSTANADFDAALAVDCNAAVDGADVGKYLDLDTCKREVLVGMPAAPSSTSSSFAAVTESSLAGGCTADALNIRTDEKMPAKGEISGQESNCDIENSWSQPMYGEISARFFKTTFPGIFQHENGWNHDEYFTVQDLSASAAATGAGRSAKSFDFRLPLEATTSAAANGASGNFQLFARHTDALPSTSSANKMKKRKRDSHSGNGSSMSRVEKTPTSRIQPTATITSQQLLLHQPQQNQAQNTQEPLQQSQQSVDSAISATFLAGSTSSAAAAVAPNADNTALIVEQRRPRKKVYQCTHCTAEFSKLKDRNSHMILQHNYVRQNRRLICVQRSDAAAAASSTTNAIHSGDVDNVVVVNMADGCSSSLVRSDSMEFIEDSKQGIVKIEVDHAYHSLSATAAPPAGSGAGIDAKLELMDDKQSMALVPVNGANVNGEGEGGTGDAVDTKPLIQPLALTTPATKLAALYRMLVSYNISTLKDSHNLSEMEQKLIEQSIFFCYVCRRNFTSVKLYDAHLSEHPAECFTCGKTFQRWKNFSLHLKRHLGWKEFGCNVCDKKFVVRSALVEHMRMHTGHTPLKCKVCGKYFKRYSNLTQHRKRHGKQIIRKKEYVCHCGEVLPSKARFLWHKETHDAKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPVECPLCKHTFAKSSIKAHIATHSMDTQHDCTICNKSFSTKWNLKIHSWVHANRTSKPFKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCSICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045703;
- 90% Identity
- -
- 80% Identity
- -