Ccap011942.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:843771-846789[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0051 0.26 11.3 1.5 2 23 249 271 248 271 0.92 2 15 0.034 1.7 8.7 0.0 3 23 277 298 276 298 0.89 3 15 0.72 37 4.5 0.3 2 23 305 326 304 326 0.93 4 15 0.00062 0.031 14.2 0.2 1 21 350 370 350 371 0.93 5 15 0.00015 0.0076 16.1 0.8 1 23 374 397 374 397 0.96 6 15 0.0056 0.29 11.2 1.9 1 23 418 441 418 441 0.98 7 15 0.07 3.5 7.7 4.7 1 17 455 471 455 478 0.79 8 15 6.5 3.3e+02 1.5 0.5 2 9 509 516 508 529 0.78 9 15 0.028 1.4 9.0 0.6 1 23 539 562 539 562 0.94 10 15 3.4e-05 0.0017 18.2 0.3 2 23 571 592 570 592 0.96 11 15 0.0099 0.5 10.4 0.8 1 23 598 620 598 620 0.97 12 15 3.6e-07 1.8e-05 24.4 0.9 1 23 625 647 625 647 0.98 13 15 0.0003 0.015 15.2 3.4 1 23 653 675 653 675 0.98 14 15 0.00073 0.037 14.0 2.8 2 23 681 702 681 702 0.95 15 15 0.0025 0.12 12.3 1.9 1 23 707 730 707 730 0.97
Sequence Information
- Coding Sequence
- aTGAGGATAAAGTCTTTAAAAATGTACTGTCGGGCTTGCATGCAAGTGAATTGTGAAGAggttgtaaatttaaaatatagcgaTTTACCTGATGGCAAAACGTTGTTTGACTATTTTAATGAATGTACTCACCTTCAAGCAGAACCGAAAGATGAACTTCCCCAAATATTATGTACGCGCTGCACAAAACATCTTTATGAtgcttataattttataaagaaagcGCATCAAACAAATACGGAACTACTGAAAATATTGGTGGTACAAAAATCAGAGCAGGAATTTCTTTGTAGTACCACTGAAGAAAAAAcgcatatAGTGGAATTCGCAAGGGACCCTCTTGCGGTACCCGATCCGCCAACTGTTGTAAGTAAAATTTCAGCAACTGAATGCTGTCGGGAACTGGATGTATCACTATCAGATATTAAAGTAGAATTAGATATTCCGGAGGAATTCGAAAATATAGGCGAACATCATAAGCAAGACGAAGTTAGATTACACGAGACCGAGGAAAATTATGTGCCGGAAATCTCGCTACAACGTGATATTGATGAAAGCGTTCCTATTTTGAAAGATGATCAAGAGTCATCCAttcaagaaaatagaaatatggaATCCTCAATACAAgtggaagaaaatgaaaacgattCCATTGAAGGAGATGACTCAGACTACACATTGtcaagtgaagaagaagaagaaaactgtAATGACTTATCGAGAGCCAGGAGATTACAAAACGTCACCTGCTCGCTTTGTGATTTTAAGTGTAAATCTCAAGGAGAACTGAAAGATCATATTTTCGAGTTGCATAAGTacAACATTCTCTGTATGAATTGTCCGAAGGTATATGAGTTTCCTGATGAGTTACGAATCCATGAATATCTTGTTCATGGAACAGGATCACCTATTGAGTGCGAGTGGTGTAAACAATCTTTACCTAGAGACGATTtgataaaacattttcaaaaaagacaTAGCAACGCATATGCAAAATACTTTCCAAGAATGAGAGTTCGGGGTACAAAGGAAGATGATACTTCCCATTTTCGTTGTGAGTATtgtcagaaaagtttttccTCGATACTTGAATTAGCTGATCACACAAAAGGATGCAAATTTGATTGTCCGTTatgtttgaaaacatttaaaaaggcTGGTTCATATAGGGCACACACAAAAAGAATACATAATCGTACAGTTTCAAGCCTAAAAGATTCGTCAGATGGAactgaaataaaagataagCCATTCAAATGCTCATTATGTCCCAGACAGTATCAACGCAAAAGTATACTTCGAGGGCATATGAAATCTAAACATGATCAAAACTTAGATGATTTTGATGATGACACAAAATTATATGCTTGTGAATATTGTGataaacgttttaaaaatcGGACTTCTGTTTACTGTCACAAATCACGGAAACATCGGAATATGATGTCAGAAAAATCTGGAGATAGAGATAACAGTACAATTAATGGCAACGAGGAAATCGAGAGTGAATATCCGGACTtcgttaaatgtaaatattgtaatagAGAAGTGGAaggaagtaaaatacaatatcaCGAGAAACGACATATTTATGCAATGAACAGAAAGAGAAactttttatgttctttttgcCCTCGAGAATTCAATTCTGAAGTAACCGTTAAATcacatgaaaaaaaagttcatttgggTAAGAAACCTGAACCAAAGCAATGCCCAATTTGTGAAAAGAAATTTGATCCTGAATATTTAAGAAATCACATCCGAAATGTACACACCTCCGAACGTAAGTTCATTTGTGATGTGTGTGGCGATCCCTTCAAAAGTTACATTCTGCTACACAGTCATAAACGTTTGCATTTTGAGCGTAATTTTCCATGCACTGTGTGTGAGAAGAAATTCATACGCTCTTTTGATCTTAAAGTACACATGCGCATGCATACTGGGGAGGAGCCTTATGCTTGTCATATATGCGATCGACGCTTTAAAATGAAAGTCCGTCTAAATTATCATCTACAGCGTCATGCCGGCATTAAAAGGAAATGCAATGTATGCGGCAAAGAGTTCAATCACGTTAAACAGTTAAAAATCCATTCATATAAACACACTGGCATGCCATACAGATGTTCCGTGTGTGATTATGGATGTGCGCAGCGTGATGTttttagGAAACATTTGCTGCGAATGCACGATATGACAATGACTCCTGATGAATATTGTGCTATGTTTAAGGCGAATACTGGCCGATTTCCGCATGTGAAAACTCTGGAGGAACTACAATCGGCGGTGGAACAGGAGTAG
- Protein Sequence
- MRIKSLKMYCRACMQVNCEEVVNLKYSDLPDGKTLFDYFNECTHLQAEPKDELPQILCTRCTKHLYDAYNFIKKAHQTNTELLKILVVQKSEQEFLCSTTEEKTHIVEFARDPLAVPDPPTVVSKISATECCRELDVSLSDIKVELDIPEEFENIGEHHKQDEVRLHETEENYVPEISLQRDIDESVPILKDDQESSIQENRNMESSIQVEENENDSIEGDDSDYTLSSEEEEENCNDLSRARRLQNVTCSLCDFKCKSQGELKDHIFELHKYNILCMNCPKVYEFPDELRIHEYLVHGTGSPIECEWCKQSLPRDDLIKHFQKRHSNAYAKYFPRMRVRGTKEDDTSHFRCEYCQKSFSSILELADHTKGCKFDCPLCLKTFKKAGSYRAHTKRIHNRTVSSLKDSSDGTEIKDKPFKCSLCPRQYQRKSILRGHMKSKHDQNLDDFDDDTKLYACEYCDKRFKNRTSVYCHKSRKHRNMMSEKSGDRDNSTINGNEEIESEYPDFVKCKYCNREVEGSKIQYHEKRHIYAMNRKRNFLCSFCPREFNSEVTVKSHEKKVHLGKKPEPKQCPICEKKFDPEYLRNHIRNVHTSERKFICDVCGDPFKSYILLHSHKRLHFERNFPCTVCEKKFIRSFDLKVHMRMHTGEEPYACHICDRRFKMKVRLNYHLQRHAGIKRKCNVCGKEFNHVKQLKIHSYKHTGMPYRCSVCDYGCAQRDVFRKHLLRMHDMTMTPDEYCAMFKANTGRFPHVKTLEELQSAVEQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -