Ccap001419.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:405135-408749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 1e+02 3.2 0.5 2 19 75 92 74 97 0.89 2 20 0.00079 0.04 13.9 0.0 1 23 104 129 104 129 0.92 3 20 0.079 4 7.6 6.4 2 23 140 161 140 161 0.94 4 20 2.1 1.1e+02 3.1 2.3 2 23 172 193 172 193 0.86 5 20 0.049 2.5 8.2 0.3 3 23 202 223 200 223 0.94 6 20 0.00011 0.0053 16.6 0.4 1 23 229 251 229 251 0.96 7 20 0.05 2.5 8.2 4.7 1 23 257 280 257 280 0.91 8 20 7.2e-05 0.0037 17.1 0.4 1 23 285 307 285 307 0.98 9 20 0.7 36 4.6 0.0 1 21 316 336 316 337 0.93 10 20 1.5e-05 0.00075 19.3 1.2 1 23 356 380 356 380 0.91 11 20 0.12 6.1 7.0 0.3 1 23 385 407 385 407 0.91 12 20 0.019 0.98 9.5 0.3 3 23 425 448 423 448 0.92 13 20 0.89 45 4.3 0.6 2 19 452 469 452 472 0.81 14 20 0.0015 0.078 13.0 2.9 1 23 478 501 478 501 0.97 15 20 0.028 1.4 9.0 0.4 3 23 508 529 507 529 0.94 16 20 0.057 2.9 8.0 1.9 2 23 533 555 532 555 0.95 17 20 0.002 0.1 12.6 4.2 1 23 561 584 561 584 0.93 18 20 0.0014 0.07 13.1 0.4 1 23 589 611 589 611 0.98 19 20 2.5e-07 1.3e-05 24.9 1.7 1 23 617 639 617 639 0.99 20 20 0.074 3.7 7.7 0.1 2 23 646 673 645 673 0.83
Sequence Information
- Coding Sequence
- atgagTGAAGACAGCGACGAGgagtatgaattttttaatggaacTAAAGttcagaaaagtgaaaaagaagagCTGCCAAATTTCGGCTTTCCGAATCTCAAAGATGATCCTGATTTACTACAAGGGTTCAACTGCATCGATTCCTCCAGCCTTAATGTTAATGAGTATTTAGATGCAGCGATCACAAGTAACTTGAGAACAATTGAGTTCAAGTGGAAAAGCGAATGTCTGATTTGTTCAGAGCAATTTGAGGAGTATCAGAATTTGCTGGAACATTGTATGCTGTTGCATAAAGATGAGTTTGACGAATATTCATGTACGTTACAAGATTGTGGTGTTGTGTTTGCCGATGAGGATCTACTCGCACGACATTTAGTATTAGCACACAGCGATTTGGAGAACGTTAAAATATATGGCAGTTGTTCTTTTTGTGGATTACGGTACTCGAATTTCCATCAATTGAATAAGCATTCGTGCTATCATAAACTAAAACGCACACCTGGCATACAACCTTATTGTGAGTATTGTAAGGAGGAGTTTGTCTCACATAAAAGGTTGCTGTTTCACCTGCAATTTCATTTAGCAAAGCGCCGTCCAATGGCTTGCTTAATATGCAACCAAGAGTTTTGCGATGTGGATGAGTTCTTTCTTCACGTAAATTATGCGCACGAAAAGCCAGATAAACATGCATGTACTATCTGTGATCGCGTATTTATAGACATGGAAAACTATAATTTGCATGTGAATATGCACAAAAACAAGCCAAAGTTCAAATGTGATGAATGCAGTAAAATGTATCATGTTGCAAGGATGCTGAAAAAACATAAGgaAGATTGTCATAccaaaattgaatacaaatgcGACTCTTGCCCGCaaatatttccaacattttcaaTGCTACAAAACCATTTAAAATGGCATAAAGCCGATGTCGAGAAGCAAGTCTACACTTGTTTGAATTGTGGCTTGATTGGCGGTGATTACGAGAGTCTTGTGAAACACACCAATCAATCATGCTCTGAATGCTTCGATTGTGAAATTGTTGAAGAAACACTTATGGTATCCTATCGCTGTCAATACTGTTCACAAGATTTTAAGGATAAAGATTCGTTGCGGAAGCATCGTGCTACCGGCGTGCAtgataataaaaagttcagttGTCCCATCTGTCAGGCTGAGTTCGATAATCCTAAAGGAAAACGTTTTCACAtggcaaaacataaaaattatcaagCTATATTAGAAGGCCTACCCATAAAGCGTTTAATGATGTGCGATGTGGGCGACTGTGAAGAGTCATATGGTGAATGGTATTCCCTGCAACGGCACAAGCATCGTTTACACCAACCAAACAGCTGTCCTAAGTGCAATAAAAAGCTATCGAACGTAGCTGAATTCGAGTGTCACATTGCACAATGTCAAACTAATGAATTTACCTGccaattttgtaataaaaaatgtccTACCAAAATGTCTTTATCCGTGCATATAGCGCGTAGTCATAATAACAaaaatATACTCTGTCCACACTGTATGCGCGCCTACAAGGATGAGCAAGCGCTGCAACAACATATAGACTATACACATGTGCCAGTGTCGTGTACGCATTGCGAAAAAGTTATAAGCTGTCGACGCTACCTAGAGGTACATATGCGTGCTGTACACGAAAGTGTCTGCAGATATTTCTGTACGCATTGTAATAAAGGATTCTATCATCGCTCACAAATGGAGTTGCATGAAGAGAGCGTACATGTGGACGCCATTTACAGATGTGGCGAATGTAATTTTAATACCAGATATGCCAAGTCATTAGAAATACACATAGCTAAACATTTGAAGAAGTTAGAATTTAAATGTCCACATTGCGACAAAATGTTTGGTCGTAAAGGCGCACTGAATATGCACATTAAACGCCATATGAATGATAAGcgTTTTAGATGCGCCGACGTCATTATTGATGGTTGCGATGCTTCCTTTGTTGCACGCCATTTACTCAACACTCATATTATAAACAAACACTCATCGCAAGGTAAAAGTCGCAAGACAGCCAGCAAAGGTCGACAAAGCAAAGATGTTGGCACGCAACGGATACCAAAGCAAAGCAATAGAAGTGTACAGCACGCAGTGGTCGATATGAACACAGATGCAGCGTTGCTTCAAACAGCTACAGCTACGCCGACTTTAGCAGATATGGAAACTGAAAATAACTTTACATTGGGTGAAACATTGCCAAGTGCTGCTGAAGACAATTGCATGTTGTTGGTGGTCGACGATGGATCATTACAAATGGTTAGCGCTGTTGATAATGCACAATTATTTGTATACAGAGAAGAAATGTGA
- Protein Sequence
- MSEDSDEEYEFFNGTKVQKSEKEELPNFGFPNLKDDPDLLQGFNCIDSSSLNVNEYLDAAITSNLRTIEFKWKSECLICSEQFEEYQNLLEHCMLLHKDEFDEYSCTLQDCGVVFADEDLLARHLVLAHSDLENVKIYGSCSFCGLRYSNFHQLNKHSCYHKLKRTPGIQPYCEYCKEEFVSHKRLLFHLQFHLAKRRPMACLICNQEFCDVDEFFLHVNYAHEKPDKHACTICDRVFIDMENYNLHVNMHKNKPKFKCDECSKMYHVARMLKKHKEDCHTKIEYKCDSCPQIFPTFSMLQNHLKWHKADVEKQVYTCLNCGLIGGDYESLVKHTNQSCSECFDCEIVEETLMVSYRCQYCSQDFKDKDSLRKHRATGVHDNKKFSCPICQAEFDNPKGKRFHMAKHKNYQAILEGLPIKRLMMCDVGDCEESYGEWYSLQRHKHRLHQPNSCPKCNKKLSNVAEFECHIAQCQTNEFTCQFCNKKCPTKMSLSVHIARSHNNKNILCPHCMRAYKDEQALQQHIDYTHVPVSCTHCEKVISCRRYLEVHMRAVHESVCRYFCTHCNKGFYHRSQMELHEESVHVDAIYRCGECNFNTRYAKSLEIHIAKHLKKLEFKCPHCDKMFGRKGALNMHIKRHMNDKRFRCADVIIDGCDASFVARHLLNTHIINKHSSQGKSRKTASKGRQSKDVGTQRIPKQSNRSVQHAVVDMNTDAALLQTATATPTLADMETENNFTLGETLPSAAEDNCMLLVVDDGSLQMVSAVDNAQLFVYREEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -