Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:1147690-1159897[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00016 0.0082 16.0 3.4 1 23 136 158 136 158 0.98

2 11 0.015 0.74 9.9 10.4 1 23 164 186 164 186 0.96

3 11 8.8e-05 0.0044 16.9 6.8 1 23 192 214 192 214 0.98

4 11 5.3e-05 0.0027 17.5 1.6 1 23 220 242 220 242 0.95

5 11 1.7e-05 0.00088 19.1 0.5 1 23 248 270 248 270 0.97

6 11 1.7e-06 8.5e-05 22.3 0.1 1 23 276 298 276 298 0.98

7 11 0.00013 0.0064 16.4 2.1 1 23 303 325 303 325 0.97

8 11 0.006 0.31 11.1 0.1 1 23 331 354 331 354 0.90

9 11 0.0014 0.069 13.1 0.1 3 23 415 435 413 435 0.97

10 11 0.012 0.6 10.2 2.7 1 23 549 571 549 571 0.95

11 11 0.0035 0.18 11.8 4.9 5 23 584 602 576 602 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00016	0.0082	16.0	3.4	1	23	136	158	136	158	0.98
2	11	0.015	0.74	9.9	10.4	1	23	164	186	164	186	0.96
3	11	8.8e-05	0.0044	16.9	6.8	1	23	192	214	192	214	0.98
4	11	5.3e-05	0.0027	17.5	1.6	1	23	220	242	220	242	0.95
5	11	1.7e-05	0.00088	19.1	0.5	1	23	248	270	248	270	0.97
6	11	1.7e-06	8.5e-05	22.3	0.1	1	23	276	298	276	298	0.98
7	11	0.00013	0.0064	16.4	2.1	1	23	303	325	303	325	0.97
8	11	0.006	0.31	11.1	0.1	1	23	331	354	331	354	0.90
9	11	0.0014	0.069	13.1	0.1	3	23	415	435	413	435	0.97
10	11	0.012	0.6	10.2	2.7	1	23	549	571	549	571	0.95
11	11	0.0035	0.18	11.8	4.9	5	23	584	602	576	602	0.92

Sequence Information

Coding Sequence: ATGCCATATTTACTATCTACAGATGGATCGCTAACTGTTCAGAAGGATGTTAAGGGAGGTCTAGCAGCTCAGAAAGGAGGTGTTGTTCGACGTATGTTTGTAGTCAACGAACCTTTTGCGCCAGGAGCCCAAagGGTCATTACTGCAGGTACTACTACACCATCGGTGGTGAAGAAACAAGACCAACAAGTGCTCAGTATTAACTGCGACAAAAATTGTGACATTTTGCCAGGAATATCAGTTCAGGTTCAAAAAGTAATTCAAGGTTTAGAAGAGACAGAAGATTCACAAGGCGATGCGCCTCTAAAGTTAGAGCCTGGTACTTTAGAGCTTTCACCGAAAACAGAGTTACAAGATAACATGAATTACAATGAAAATGACGCCACAGTTAAGAAGGAGCGACCATATAGCTGCGATGAGTGCGGAAAATCGTTTCTGCTAAAGCATCATTTAACAACGCATGCGCGAGTACATACAGGAGAACGGCCGCACGTATGCGTGCATTGCAGTAAAAGCTTTGCTCATAAGCACTGTCTAAATACACATCTTTTGTTGCATTCAACTGATCGACCCTTTCAATGCACCGAATGCAAAAAGAGTTTCACTTTGAAACACCACCTGTTGACTCATTCACGTGTTCATAGTCGTGATCGGCCATTTGTTTGTCCTGAATGTGGACGTACGTTCCCATTGAAACGGCATTTAGTAACACACAGTAAATTTCATGCTGGGGAACGACCATATGTATGTGAAGAATGCGGCGAAAGCTTTGCTCAGGAGAATCACTTAATAATGCATTCACGTTTTCATGGATCCTTAAATCCATTTGTATGCCCAGATTGTGGAGCTACGTTTCCACGCAAATTTCAGTTAGTAAACCATGGCCGTATACACGGTAAAGTGCCACACTCTTGCACCTTGTGTGGCAAAGAGTTCTTGCAGAAGCGTACGCTAGTTTCTCACATGAGAATTCACACTGGCGACCAGCCATATCCTTGCATTAGTTGTGGAGAAGGATTTATGTCGAAGGCTGAATTAAATCAACATGTGCGTAATACACACGGAGGCGTCAATCCAAACTCGTCAAATGCCACGATTAATTCTAATCAGCAACACCAttcgcagcagcaacaacaacaggcgcAGTCTTCACATCCACAAACAATTACTGTTGTCAGTAATCCAGCGAATCCGGCATTATTAACTGTGGCAGGAAATGATGGCTCACGTCCCCAATTTGGTTGTCGCGAATGTGGAAGTGCCTTCAACAGTAGAGAAGCGCTAGCGCTTCATTTGCGATTGCATACAGGTGACAAGAGCCTTATGACTGACTTGTGCGCTTTGACTGCAGCATTGCCGGGTCACTTCCTCAATACTGGTCTTAATCCAGGGGCCACAGTAGTTGCCACAAATCCCAATATAGTGGCACAGAATACAGTGCCAGTGCAAATTATTTCATCAACCGGTCAAGTCATGACCCAAACCACATTGGTGCAAGCCGCCGCAGCAACACATCCACAGGCTGTTGTTACCAACGTCCCTGGCGTAATGCATCatcagcagccgcagcagcaactTACCAATACTGCGCCACAACAGCATCACCCTCAACAGCAGCAAGTCACGCCGCCCAAACCAAAGTCACACTTTTGCGCTAGTTGCGGCAAAGGTTTTGCCGCTAAGCATGGCCTCATGCAACATAATCGCAGACATCCCAATGGTGGTTGCACTGTTCGTACACATGTTTGCGAGTGTGGCAAGGCATTCTTCCAAAAGAATCATTTAATGCTGCATCAGCGTCAACACTTGGAAACTAAACCGACATTGACTGCCtctcaacagcagcagcaacaacaacaacaacagcagcagcaacaacaacaggtgcGTTGA
Protein Sequence: MPYLLSTDGSLTVQKDVKGGLAAQKGGVVRRMFVVNEPFAPGAQRVITAGTTTPSVVKKQDQQVLSINCDKNCDILPGISVQVQKVIQGLEETEDSQGDAPLKLEPGTLELSPKTELQDNMNYNENDATVKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCSKSFAHKHCLNTHLLLHSTDRPFQCTECKKSFTLKHHLLTHSRVHSRDRPFVCPECGRTFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCPDCGATFPRKFQLVNHGRIHGKVPHSCTLCGKEFLQKRTLVSHMRIHTGDQPYPCISCGEGFMSKAELNQHVRNTHGGVNPNSSNATINSNQQHHSQQQQQQAQSSHPQTITVVSNPANPALLTVAGNDGSRPQFGCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTGLNPGATVVATNPNIVAQNTVPVQIISSTGQVMTQTTLVQAAAATHPQAVVTNVPGVMHHQQPQQQLTNTAPQQHHPQQQQVTPPKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPTLTASQQQQQQQQQQQQQQQQVR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00081531;
90% Identity: iTF_01189759;
80% Identity: -