Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:155156-157395[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 0.62 10.1 7.5 1 23 224 247 224 247 0.96

2 10 3.5e-06 0.00018 21.3 5.4 1 23 252 274 252 274 0.99

3 10 0.00041 0.021 14.8 6.7 1 23 298 321 298 321 0.98

4 10 3.1e-07 1.6e-05 24.6 2.2 2 23 331 352 330 352 0.97

5 10 0.00014 0.0073 16.2 0.6 1 23 361 384 361 384 0.95

6 10 0.00029 0.015 15.2 0.1 1 23 390 412 390 412 0.98

7 10 2e-06 9.9e-05 22.1 0.4 1 23 418 440 418 440 0.97

8 10 0.00022 0.011 15.6 0.5 1 23 445 467 445 467 0.96

9 10 1.5e-06 7.8e-05 22.4 1.7 1 23 473 495 473 495 0.97

10 10 0.038 1.9 8.6 3.8 1 23 501 524 501 524 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	0.62	10.1	7.5	1	23	224	247	224	247	0.96
2	10	3.5e-06	0.00018	21.3	5.4	1	23	252	274	252	274	0.99
3	10	0.00041	0.021	14.8	6.7	1	23	298	321	298	321	0.98
4	10	3.1e-07	1.6e-05	24.6	2.2	2	23	331	352	330	352	0.97
5	10	0.00014	0.0073	16.2	0.6	1	23	361	384	361	384	0.95
6	10	0.00029	0.015	15.2	0.1	1	23	390	412	390	412	0.98
7	10	2e-06	9.9e-05	22.1	0.4	1	23	418	440	418	440	0.97
8	10	0.00022	0.011	15.6	0.5	1	23	445	467	445	467	0.96
9	10	1.5e-06	7.8e-05	22.4	1.7	1	23	473	495	473	495	0.97
10	10	0.038	1.9	8.6	3.8	1	23	501	524	501	524	0.96

Sequence Information

Coding Sequence: ATGTCGAGTTCCATTATGGAGTGCAAAGGTGACATTGCTGACGCTGAGTGGCAATTTTGGTGCCGATTGTGTTCCAAAGATGATGTACGAAATATCAACATACTACCAGAGGTGAATCAAACAACGGCCACAAATTCTCCAAACTCTCTTATGGACTTcattacagaattttttaaaattcaaATTGAACAAGATGCTGAACTACCACACTGGCTTTGTCCACAGTGCTTCTCTTTGCTTACAGCTCTTTCCAAATACACAATACAAGTGAAGAAAGTCCAGAACATGTACAACGAAATTCAAAAGTTTACTGATCGAAAAAGTCTTAATCTAAGAGAATTCCGTGAAAAATATAACTTGCTGGATGAtgatctatttatttttagtttatcagATACAAAATTgacaaacgaaaatattttcatacccGATGTAGTCGAAATAACGGAGAACATGATAAAGAATGAAGTATTAACAGACGAAGTGCAAACTGgtacatttttcgaaaatgtcgagTACAAAAGTGAATTCCAGGATCCTTTTGGTGATGTGGTGGAGAATCAATGTTGTGAAGTCGATTATAATAATTCTAATAAAGTTAGCAGGGATTTagaaacaaataatgaaaaacaatttgaaaaaaccaATAGCGGTATAAaggaagataaatatttttgtaaagactgttcaatttatttttcacacagtCTCAATTATCACAGGCATATGAAGCAAAAGCATGGAAAAGGTCTCTTTACTTGTCCACGTTGTAGTAAAACCTTCAAATACGCATGTTATTTGAATCGTCACATGAGATCACATCGTCCTCCAAATGCGGCTCAGAAGAATAAAACATCAAGCAGCACCGAGGAAGCAACAAAGGAGTCTAATTACACTTGCAGCGATTGCTCGATGCATTTTCAACGTAGCAGTAATTATCACgtacatatgaaaaaaactCATGGCGTTGTTAAAACGGAGCCACATCTTACATGTCCACAATGTGGGAGAACATTCAAAACTACTTTTAAACTAAATAGTCACATGAGAACTCACCGTCCGATGGCGGAGAAGCGAATATTTCCATGTCCGCAATGTGAACGAAAATTCCAAACGAAAGATTACGTTGCTagacatataaaatttatacatgaGAACATACGTCCCTTCATTTGCGAAGAATGTGGTGAAGGTGCATGTACAGAAGCTGCCTTGCGAGAGCATATGCTCACACACACCAACGATACACCCTTTATATGTGAAGTATGTGAGAAAGGCTTCAAAAATCAATCACGTCTGAggaatCACATGGAGATACATAGTAGCAATAAACACATCTGCAGCGAATGTGGCTTACAATTAAATTCTCGAGTAACACTAAATCGTCATATGCTTGTACATTCAGATGTAATGAGTCATAAGTGCGACTACTGTGGGCGGGAATTTAAACGTGCTAAAACATTAAAAGCGCACTTAATACTGCATAGTGGCTTAAGGCCTTATTCTTGTGACTTTTGCGACAGGACCTTCGCTAACGGTGCCAATTGTCGTACACACAAAAAGAAGTCACATCCGGAAGAGTTAGCTGCACAGGAGGCTTCCGGAGAAAAGCAATTCACGAAAAACATACCCAAATTGGCTGTTTTAAAGACAGTaacACGTTCGGCTGAAAATCTCGTACCTGTGGTATCTAAGCAAAGTGGTAACTTTTCAAGTGGAGAAAAGCCGAAACCACGTCTTAAAGCAGAACTTCAACCACAACCTCaggctcaacaacaacaaaactcagtttttcactaa
Protein Sequence: MSSSIMECKGDIADAEWQFWCRLCSKDDVRNINILPEVNQTTATNSPNSLMDFITEFFKIQIEQDAELPHWLCPQCFSLLTALSKYTIQVKKVQNMYNEIQKFTDRKSLNLREFREKYNLLDDDLFIFSLSDTKLTNENIFIPDVVEITENMIKNEVLTDEVQTGTFFENVEYKSEFQDPFGDVVENQCCEVDYNNSNKVSRDLETNNEKQFEKTNSGIKEDKYFCKDCSIYFSHSLNYHRHMKQKHGKGLFTCPRCSKTFKYACYLNRHMRSHRPPNAAQKNKTSSSTEEATKESNYTCSDCSMHFQRSSNYHVHMKKTHGVVKTEPHLTCPQCGRTFKTTFKLNSHMRTHRPMAEKRIFPCPQCERKFQTKDYVARHIKFIHENIRPFICEECGEGACTEAALREHMLTHTNDTPFICEVCEKGFKNQSRLRNHMEIHSSNKHICSECGLQLNSRVTLNRHMLVHSDVMSHKCDYCGREFKRAKTLKAHLILHSGLRPYSCDFCDRTFANGANCRTHKKKSHPEELAAQEASGEKQFTKNIPKLAVLKTVTRSAENLVPVVSKQSGNFSSGEKPKPRLKAELQPQPQAQQQQNSVFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -