Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:4501056-4507305[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00027 0.014 15.3 1.0 1 23 204 226 204 226 0.95

2 15 0.0013 0.065 13.2 2.3 3 23 234 254 232 254 0.95

3 15 0.00017 0.0084 16.0 0.1 1 23 398 420 398 420 0.98

4 15 0.003 0.15 12.1 1.6 1 23 426 448 426 448 0.98

5 15 9.7e-05 0.0049 16.7 2.3 1 23 480 502 480 502 0.97

6 15 0.0082 0.41 10.7 0.3 1 23 518 540 518 540 0.94

7 15 0.028 1.4 9.0 0.5 1 23 546 569 546 569 0.96

8 15 0.26 13 5.9 0.3 5 19 580 594 577 595 0.91

9 15 0.00015 0.0078 16.1 5.6 1 23 604 626 604 626 0.97

10 15 0.066 3.4 7.8 0.4 3 23 633 653 631 653 0.96

11 15 9e-06 0.00046 20.0 1.0 1 23 661 683 661 683 0.98

12 15 0.0046 0.23 11.5 0.2 3 23 691 711 689 711 0.97

13 15 0.00053 0.027 14.4 0.5 1 23 717 739 717 740 0.95

14 15 2.9 1.5e+02 2.6 0.1 1 23 750 772 750 772 0.94

15 15 0.015 0.78 9.8 0.0 1 20 1310 1329 1310 1332 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00027	0.014	15.3	1.0	1	23	204	226	204	226	0.95
2	15	0.0013	0.065	13.2	2.3	3	23	234	254	232	254	0.95
3	15	0.00017	0.0084	16.0	0.1	1	23	398	420	398	420	0.98
4	15	0.003	0.15	12.1	1.6	1	23	426	448	426	448	0.98
5	15	9.7e-05	0.0049	16.7	2.3	1	23	480	502	480	502	0.97
6	15	0.0082	0.41	10.7	0.3	1	23	518	540	518	540	0.94
7	15	0.028	1.4	9.0	0.5	1	23	546	569	546	569	0.96
8	15	0.26	13	5.9	0.3	5	19	580	594	577	595	0.91
9	15	0.00015	0.0078	16.1	5.6	1	23	604	626	604	626	0.97
10	15	0.066	3.4	7.8	0.4	3	23	633	653	631	653	0.96
11	15	9e-06	0.00046	20.0	1.0	1	23	661	683	661	683	0.98
12	15	0.0046	0.23	11.5	0.2	3	23	691	711	689	711	0.97
13	15	0.00053	0.027	14.4	0.5	1	23	717	739	717	740	0.95
14	15	2.9	1.5e+02	2.6	0.1	1	23	750	772	750	772	0.94
15	15	0.015	0.78	9.8	0.0	1	20	1310	1329	1310	1332	0.93

Sequence Information

Coding Sequence: ATGGATAGGCAAACATTTCAAATACAATGGATACAAGGAAATAGGGATGATTTAAAAACAGCTGGAGGACGATTGATTGTTAAACCACAAGTCTCTCCGGAAGACGAATTATTGGCCCACAATTTAGTTAGCACAACTGATGAAGCCGCCGCGTATCATTTGGTTTCTGGCGCTGGAGACGATAGCAATGTACCAACTGAAGTAGATATCGATCAAATAGCcgctgaaaatttaatatttatgtcgCGAGAGTGTCAAATGGTCACTGAGATTATTGATGCCACAACGGACGAGAGTGGTACTGTCGTGGTGTCCGCCTCTGATGGCATAGACTGTACAGAGGCATTGCAgcaagctgctgctgctgttatggCGAATCAGCTGGCTGAGGAGCAAGAGGATGCAGGTGGGGGATTTATAGACAGTTTTGTCGACAATACACCACAAATGGTAACAGAGGAAGTTATAACCGACGACTGGGTACAGCATCAAGGGGAAGAACGGGTAGAAATACCAGCGGATCAGATAATTTGTTCGGGTTCACAAGTGTTACTTGATATGGAGGTCCCATTACCAACTGTTCAAGATGAATACACAGCATTACGTCCTTATCCTTGTGATTTCTGCAGCCGACGTTTTCGTAAAAAGACAAGTTTAATGAATCACATTGTAGCACATCAAAACGACAGACCACATTTGTGCAAACTGTGCGGTTCACGTTTCTTCCGACGCTCGgatttaataaatcatttgaaAGCACATGCTGATGCACCAGATCCCGAATTGGATTCCGAATTTATGAATTTCGTTGCGCAAGAACAGCAACAGCTACAGGCGAAACAACCAAATGACCACTACTATGAACAGGATTGgacaacacaaataaattctttgccACGTAGCGAAAGATCTAGTCGCAAACCGCATAATGCCAGCGGTAATAGTTCATCTACCTCAACGTCGACGACAGTAGGTCGTGGTCGTATTAGCCGTATAAAGCCAAAAGAAGAACGTTATATACTGGATGAGCCAATGCGGAATGAAATAAACGAGTCGGCGAATATTGACAATCCGTCAAAAGCTTATGAAGACTGCCAGCAACTACAAGCTTCCACAGCTGTTgttaaatttacacaaaatcaaTCCCCAGCccatgaacaaaattttcccaTTATCGATGAAAGTAAACCGTTTGTTTGTCAGCAATGCGGACTGGCATTCGCACGCGAAAAAGCATTGCTGGCGCATACAAAGAATCATCGTGATGATCAGCCGCATGAATGCAGTCACTGCAATGAGATGTTCTGGGATGCTAACGGTTTACAAGAACATCTGAAGACACACCAGTTCGAAGAGAGTAACTCAGAGTACGATCCGGAAGAAGCAGAAGCTGAGGAAACTCAAAGTGAATCCGAATCGGAACGCTTGTATGGGGAGTTCTACTGTAGCGAATGTGGCATGTCTTTTCATCGTGAAGAGCTATTACGTAGACATTCTAAAATTCATGCAAAAACTGTGGGCGAATGTGATGTAGAAAAAGACAAGGACCGGCATTGTTGCAACACTTGTGGTGAAACATTCGCTGAGGCATTAGATTTGTTAGCGCATGCTGAAATACACGCCCGTTATCCGCCATTTAAATGTGTTCTGTGTGGTGAAACCTTCTTCGAGGAGCTTACTATTAAACGTCATCTGCAGTCTCTGCACCCCAACGATATGACACCCAATTCGTGCATACTTTGTGGTAAGGAATGTCGCGACCGCAAAGCACTGATAAAGCATGCCTGGGATCATTCTCGTGAAAAATGTCACTCATGTTCGAAATGTGGCAAAAACTTTCACAACAAAGCGCGCCTAAAACGCCACATGGCCTCCCATCGAGATAAGTCAGTTATCTGCGATGTCTGTCAAGAGGAATTTCCTGATGGTCGCACGCTTTCTAATCATCGACACTCGCACACCAATGCTTCGGGCAAAATGTTTCCGTGCCATGAGTGTGGCAAAACTTTTGGTTCACGCAGTTCACAACAAATACACGTCCGGATACACACCGGCGAACGGCCGTATGGGTGTCGTTTCTGTTGGAAGGCATTTGCCGATGGTGGCACACTGCGCAAGCACGAACGTATACATACGGGCGAAAAGCCTTACGCTTGCTCGGTATGTGCGCGTGCATTCAATCAGCGTGTTGTGTTGCGCGAGCATATACGATCTCATCACTCGGGCTTGGATGTGAAGCGTAACACTTTCTTTTGTACTGTTTGCTCAATGGATATGCCATCATCACCCGACCTAGTGCAACATTTGATACAACATAGTGATATGAACACTGCCATGCAGAGACAACCAGTGACTGGTCCACGTAAGTATAAACGACGAAGAAAGCTAAAACCACATGAAATTGCGCGTCTACGTCGCGAAAGTCAACAGAACGGTAATGGCAGCGACATTGAGATATCAGACTTCGATATGGACAATGTAGATGATCTCCTGGGCATAACAGATCCAAATGAAGCATCCAAAGCCCCTACAAAATCCAAACGCAGAAACGCCAAACATAACCCTAACAACAGTGCTTTGATAAACGAAGGAATTAATGGCGTCATATTGCCAGATAATGATTTACTTATGGAGCGCCCACGAAAACCGCGTTATAAATCGACGGGCAGTAACTCGGATACATTATGGCAAACCAAGCTCATCAACACGAATTCAGTACTTTCGAATTTAGAAAACACACTGCAAAGTATCGACACACTGGTCGTGGGCTCCTCAGTTAGTGGTACTACTTGCCATGCTGAAGTGGAAGAACGCAAGCCAAGATTTAAATCAGGCGGTGACAATAATAACGGTGGATCACAACGCACGCAAGAAGTGCAGATAAATAAGAATCACAATGGGAATAAAGGACGCAAGCGAACTGAAAAGTCAACAACATCGAAAGTGAGCCGTCCACGCATGATTCACACCGAAAAATGGCCTGCCTCAAGCAATGAAGTTGGACGTAAGCGTTCGAAGACTGTTGTAACGCAAAAGGAAGAAACCGATTTAGATTTATTGTGTCGCACTCGTACAATTGTCGATGATTATGAGATTATTTCACCTGCCACTGAGTTGCCCAAACAGATCAGTTCAAGTCCACCGCGTATCAAGGAGgagataatacaaaataatcacCATGAACATTATCAACAGCAGCGTACCATGCAATATAGTACACAGCGTCTGAGCTCCTCTAGACATGTTGATTTGTATGATGCACAATTCCTTGGCGGTACCTCTACGCTGCGCAAAGAAGCTTATGAGAAATTCAATCCCAGTATAGTTAATGACCTCGAAGAGATTTTACGTTCGCCCATTAAATGTGACCGCACCGAACGCCATCGCTTCATAAGTGAATCCTCTACGCCTTTCCTTGAAGAGGAACAGCATAACATGATAAAAATCGAACCAACCTCGCCCGATTTACGTGAAATCGTTGTTGGCGTAAGCGCTAGTGGTGGCGTGGGTGTGAGTGGGAGCAGCGCCAGTGGCAGCAGCAGTGATCGTCGCAATGCCCGTACACCACGCAGTCGGGCCAGCGTTATTAACCGAAAATACCTCGAATTCGAATCGGATTTGCATAGTAATGGCGTAACCCGAGCACAAAAACGGAACACCACTCATACTGCCAATAGCGGCAATTCAAGAACTAAACAAGCCAGGAGcaataaaagagagaaaaaagaaagttCCATAAGCAACCAAAGAATTAGCACTTACTCTTCCACATATAGTGGCTCGTTAACTACTACCAATGATTCATCTTTCTCCTCCTTATCACCGACTGAGGGTGTTTCTGCCGTTTTGTCAACATCACGGCCAATatcaacaacggcaacaaccaCACCCGTCACGGCGCCTCAACCTGAACGAAAAGTGCGTTACTTCGAGTGCGAGATGTGTTCAGCTGTTTTTCCGGATCGCGCACAACTGCTGGATCATgtgcctatacatatataa
Protein Sequence: MDRQTFQIQWIQGNRDDLKTAGGRLIVKPQVSPEDELLAHNLVSTTDEAAAYHLVSGAGDDSNVPTEVDIDQIAAENLIFMSRECQMVTEIIDATTDESGTVVVSASDGIDCTEALQQAAAAVMANQLAEEQEDAGGGFIDSFVDNTPQMVTEEVITDDWVQHQGEERVEIPADQIICSGSQVLLDMEVPLPTVQDEYTALRPYPCDFCSRRFRKKTSLMNHIVAHQNDRPHLCKLCGSRFFRRSDLINHLKAHADAPDPELDSEFMNFVAQEQQQLQAKQPNDHYYEQDWTTQINSLPRSERSSRKPHNASGNSSSTSTSTTVGRGRISRIKPKEERYILDEPMRNEINESANIDNPSKAYEDCQQLQASTAVVKFTQNQSPAHEQNFPIIDESKPFVCQQCGLAFAREKALLAHTKNHRDDQPHECSHCNEMFWDANGLQEHLKTHQFEESNSEYDPEEAEAEETQSESESERLYGEFYCSECGMSFHREELLRRHSKIHAKTVGECDVEKDKDRHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGETFFEELTIKRHLQSLHPNDMTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVICDVCQEEFPDGRTLSNHRHSHTNASGKMFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCARAFNQRVVLREHIRSHHSGLDVKRNTFFCTVCSMDMPSSPDLVQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIARLRRESQQNGNGSDIEISDFDMDNVDDLLGITDPNEASKAPTKSKRRNAKHNPNNSALINEGINGVILPDNDLLMERPRKPRYKSTGSNSDTLWQTKLINTNSVLSNLENTLQSIDTLVVGSSVSGTTCHAEVEERKPRFKSGGDNNNGGSQRTQEVQINKNHNGNKGRKRTEKSTTSKVSRPRMIHTEKWPASSNEVGRKRSKTVVTQKEETDLDLLCRTRTIVDDYEIISPATELPKQISSSPPRIKEEIIQNNHHEHYQQQRTMQYSTQRLSSSRHVDLYDAQFLGGTSTLRKEAYEKFNPSIVNDLEEILRSPIKCDRTERHRFISESSTPFLEEEQHNMIKIEPTSPDLREIVVGVSASGGVGVSGSSASGSSSDRRNARTPRSRASVINRKYLEFESDLHSNGVTRAQKRNTTHTANSGNSRTKQARSNKREKKESSISNQRISTYSSTYSGSLTTTNDSSFSSLSPTEGVSAVLSTSRPISTTATTTPVTAPQPERKVRYFECEMCSAVFPDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045645;
90% Identity: iTF_01045645;
80% Identity: -