Basic Information

Insect: Ceratitis capitata
Gene Symbol: su(Hw)
Assembly: GCA_000347755.4
Location: NW:452360-457096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.0067 16.3 2.0 1 20 134 153 134 155 0.95

2 12 6.3e-06 0.00032 20.5 0.3 3 23 206 227 204 227 0.93

3 12 0.034 1.7 8.7 0.2 1 23 233 255 233 255 0.95

4 12 5.6e-07 2.9e-05 23.8 1.8 1 21 262 282 262 283 0.95

5 12 9.7e-07 4.9e-05 23.0 0.9 2 23 295 316 294 316 0.97

6 12 6e-05 0.003 17.4 4.4 1 23 327 349 327 349 0.99

7 12 8.2e-05 0.0041 17.0 0.8 1 23 355 377 355 377 0.97

8 12 5.3e-06 0.00027 20.7 0.7 1 23 383 405 383 405 0.99

9 12 1.1e-07 5.8e-06 25.9 1.8 1 23 411 433 411 433 0.98

10 12 2.5e-06 0.00012 21.7 1.4 1 23 437 459 437 459 0.98

11 12 0.00038 0.019 14.9 0.2 2 22 462 482 461 485 0.90

12 12 0.25 13 6.0 0.2 3 23 508 529 506 529 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.0067	16.3	2.0	1	20	134	153	134	155	0.95
2	12	6.3e-06	0.00032	20.5	0.3	3	23	206	227	204	227	0.93
3	12	0.034	1.7	8.7	0.2	1	23	233	255	233	255	0.95
4	12	5.6e-07	2.9e-05	23.8	1.8	1	21	262	282	262	283	0.95
5	12	9.7e-07	4.9e-05	23.0	0.9	2	23	295	316	294	316	0.97
6	12	6e-05	0.003	17.4	4.4	1	23	327	349	327	349	0.99
7	12	8.2e-05	0.0041	17.0	0.8	1	23	355	377	355	377	0.97
8	12	5.3e-06	0.00027	20.7	0.7	1	23	383	405	383	405	0.99
9	12	1.1e-07	5.8e-06	25.9	1.8	1	23	411	433	411	433	0.98
10	12	2.5e-06	0.00012	21.7	1.4	1	23	437	459	437	459	0.98
11	12	0.00038	0.019	14.9	0.2	2	22	462	482	461	485	0.90
12	12	0.25	13	6.0	0.2	3	23	508	529	506	529	0.94

Sequence Information

Coding Sequence: ATGGgagatacaaacaaaaaaagcagcCCGAAGGCTATAGAACTAGGTTATCATCAAAGCAGCCCAAGTAAcgctgtaaaaattttaaatgaacgGGCTTCAAAGCGAACGAAGCAAAATAGTCCAGATATCAGCACACCATTAAAACATGTCAAGCTCTCCATAGGCAAAACCAAAACTCCACCTGAAAATAATGAAGACATGGAtcattatgttttgaaaacaataaaagacgAAGGTAACTCAGATGGCGGAGAAACCATAGCTTTTGTATTATCCGACAAGAATGAAAAGCCAAAAGAGATTGCTAATGCTGCAAGTGAAGTTGCCGAAGAGCTGCAGATAAGCGACGATGAGGAGGATGACGATGATAATGATGGCAAAAATGATATGGTTGAGCATGTGTGCGGAAAATGCTATAAAACTTTTAGACGTTTTAGTGGACTTAAGAACCATATGGAATTTTGTCGCTTTGACAGTGGATATCATTTAcgcaaaaatgaaatgttaaaaaacttggaaaaaatcgaaaaagatgCTATTACTATGGAAAACAaagatatttgcttttgttgtggaGAAAGCTATGACACATTCCATtTGGGACATATAAATTGCCCAGATTGTCCAAAATCCTTCAAATCGCAAATGAGTTACGAACGTCACATATTTATTACACATTCTGAATTCGACACTTATCCTTGCTCCATTTGTAATGCAAAGCTGCGCAgtgaaaatttgcttaaacTACACGAAGAGCAACATAAAAATCGAGGCAAGCCCTTTGCTTGTAAAATATGTGGCAAAGACTTTACACGTGCCTATCACCTTAAACGACATCAAAAGTATTCATCCTGTTCGGCAACAGGTAGTGATTCTATGAAATGTAAGGTGTGCGATAAGGCTTTCTTCCGTTTGGACAATTTACGTGCACATCTTAGACAGCACCTGGGTACACATGTAACTAAGAAACCCGAATATAGATGTCCACAGTGTAAAAATTGTTTCTACAGTTTATCTACTTTAAACATTCACACTCGAACACATACGGGGGAGCGTCCTTTCGATTGTGATTTGTGTGAAAAGAAATTTCCTTCTTTAATTGCGTTGAAAAAACATCGACGCTATCACACTGGAGAGAAGCCTTATACTTGTTCTGTGTGCAATCAATCGTTTGCAGTTAAAGAAGTGTTAAACCGTCATATGAAGCGGCACACAGGAGAGCGACCGCATACATGCCCGGAGTGTAAGAAAAGCTTTATTCAAGCATCTCAATTACGTAATCATGCTCGTACGCATATTTTGCCTTTTGAATGTTCAGAATGCGATCAAAAGTTCAAAACACAGAAACAATTGGAAAAGCATGGAAaggtacatttaaaaaaatgtttagattGCAATAGTACTTTTCGCGATCAAGCAGAATTGGAAGAACATATGGCAAAATCCGCTCATAAAAATACCTGCAAAACGGCTAGGAAAACAGCAACACGTAAATCTACAAAACGCAAGCGCACGGATTGTGCTGTATGCGACCAAAAGTTTGGCACTGTTAAGGAATTACAATTTCATATTCTTAAAGTTCACGAAACGGACCCTGAAGATTTTGTTAATGAAAAACCAAAAGACACTAAAACTGTTAAACCTGTAAAAGCCGATGTTTACAAAATAGCAGAGGAGAcatcaaatgaaattcaaattctaaGTGAAACTGAAGGTAATGCCGCCATTATGGCTGCAGGCAGTGTGAACagcaaagaaatttataataacaatgaGGGCAATAATGGTGGTTTAGTTGTGAAAGAATTCATAGTCAATAATGTACCTGCCACTAATGAAGGGGATATTGTTTTGCATGATGAAGCATACACTGTTATACCGTTGGACGGTGATGGGCCAATTGAAACTGTTACTGCTGTGACTGTGGGCTCCATTGACATAACTACCGAGGTTAAAAAAGAGCGACGCAAATCATTGGCTGAATCACTGGCTGTGGCTATTGGAAACGACAGTGTGACTTTGAAAGAGCCGATTCAGTTGAATGAAgaagatattaaattaaaggagAATGTTGGAAAACTACTGGATATGTTGGTCGACAATAAGACATTAAAGAAATTCGGCTGGCCAACCAACTCCGAAGAGaatgTTTTATGTCGTGTTATTGAAAATTGTGGATATAACTTAACAAAAGATGCTGAGCTATATCGTGATTGCGATTATGCAACGCGAATGCGTGAATATGTAAAGTTGCTATTTACCGTAGTAATTCATAATGATTCTATTAAagaattgttaaataattatcCCATTGATGAAGTAGTTGAATATGTTTTGGGTAATGATGATGACGAAGATGATGATGGCGATAATGACGATGATGgggaaaatagaaatttttga
Protein Sequence: MGDTNKKSSPKAIELGYHQSSPSNAVKILNERASKRTKQNSPDISTPLKHVKLSIGKTKTPPENNEDMDHYVLKTIKDEGNSDGGETIAFVLSDKNEKPKEIANAASEVAEELQISDDEEDDDDNDGKNDMVEHVCGKCYKTFRRFSGLKNHMEFCRFDSGYHLRKNEMLKNLEKIEKDAITMENKDICFCCGESYDTFHLGHINCPDCPKSFKSQMSYERHIFITHSEFDTYPCSICNAKLRSENLLKLHEEQHKNRGKPFACKICGKDFTRAYHLKRHQKYSSCSATGSDSMKCKVCDKAFFRLDNLRAHLRQHLGTHVTKKPEYRCPQCKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLIALKKHRRYHTGEKPYTCSVCNQSFAVKEVLNRHMKRHTGERPHTCPECKKSFIQASQLRNHARTHILPFECSECDQKFKTQKQLEKHGKVHLKKCLDCNSTFRDQAELEEHMAKSAHKNTCKTARKTATRKSTKRKRTDCAVCDQKFGTVKELQFHILKVHETDPEDFVNEKPKDTKTVKPVKADVYKIAEETSNEIQILSETEGNAAIMAAGSVNSKEIYNNNEGNNGGLVVKEFIVNNVPATNEGDIVLHDEAYTVIPLDGDGPIETVTAVTVGSIDITTEVKKERRKSLAESLAVAIGNDSVTLKEPIQLNEEDIKLKENVGKLLDMLVDNKTLKKFGWPTNSEENVLCRVIENCGYNLTKDAELYRDCDYATRMREYVKLLFTVVIHNDSIKELLNNYPIDEVVEYVLGNDDDEDDDGDNDDDGENRNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045632;
90% Identity: iTF_01045632;
80% Identity: -