Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:164765-170173[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 7 3.6e+02 1.4 0.1 2 10 257 265 256 273 0.69

2 16 0.0013 0.067 13.2 2.4 1 23 282 304 282 304 0.94

3 16 0.00026 0.013 15.4 1.6 1 23 312 334 312 334 0.97

4 16 0.00079 0.04 13.9 1.7 1 23 342 364 342 364 0.98

5 16 4.3e-06 0.00022 21.0 0.4 2 23 370 391 369 391 0.97

6 16 1.8e-06 9.1e-05 22.2 2.6 1 23 397 419 397 419 0.98

7 16 0.0064 0.32 11.0 0.2 2 23 425 446 424 446 0.95

8 16 0.061 3.1 7.9 1.6 2 21 452 471 451 474 0.93

9 16 0.00069 0.035 14.0 0.6 3 23 713 733 711 733 0.96

10 16 0.0078 0.4 10.7 0.5 1 23 738 760 738 760 0.93

11 16 0.00063 0.032 14.2 1.9 2 23 769 790 768 790 0.97

12 16 1.1e-05 0.00057 19.7 1.9 1 23 798 820 798 820 0.98

13 16 3.9e-06 0.0002 21.1 0.4 1 23 825 847 825 847 0.99

14 16 5.5e-05 0.0028 17.5 3.7 1 23 853 875 853 875 0.98

15 16 5.7e-05 0.0029 17.5 1.9 1 23 880 902 880 902 0.98

16 16 6.8e-05 0.0034 17.2 0.3 2 22 908 928 907 930 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	7	3.6e+02	1.4	0.1	2	10	257	265	256	273	0.69
2	16	0.0013	0.067	13.2	2.4	1	23	282	304	282	304	0.94
3	16	0.00026	0.013	15.4	1.6	1	23	312	334	312	334	0.97
4	16	0.00079	0.04	13.9	1.7	1	23	342	364	342	364	0.98
5	16	4.3e-06	0.00022	21.0	0.4	2	23	370	391	369	391	0.97
6	16	1.8e-06	9.1e-05	22.2	2.6	1	23	397	419	397	419	0.98
7	16	0.0064	0.32	11.0	0.2	2	23	425	446	424	446	0.95
8	16	0.061	3.1	7.9	1.6	2	21	452	471	451	474	0.93
9	16	0.00069	0.035	14.0	0.6	3	23	713	733	711	733	0.96
10	16	0.0078	0.4	10.7	0.5	1	23	738	760	738	760	0.93
11	16	0.00063	0.032	14.2	1.9	2	23	769	790	768	790	0.97
12	16	1.1e-05	0.00057	19.7	1.9	1	23	798	820	798	820	0.98
13	16	3.9e-06	0.0002	21.1	0.4	1	23	825	847	825	847	0.99
14	16	5.5e-05	0.0028	17.5	3.7	1	23	853	875	853	875	0.98
15	16	5.7e-05	0.0029	17.5	1.9	1	23	880	902	880	902	0.98
16	16	6.8e-05	0.0034	17.2	0.3	2	22	908	928	907	930	0.89

Sequence Information

Coding Sequence: ATGGAATCCTCGCGGAACAAATGTCGAGTTTGCTTGAGGGTAGAGAATTCAGTGCCACTTTTAAATTGGAACCTTCCGATTGAGGAAATCAACGAAAGTCTATCGTATGCAATATGTTTTCAGCAATGCACACAACTCAATTTGGCTCTAAGCCgtgaaaacattgaaaaagaaTCTTCAAtgataatatatgaatatttttgttatagctGTGCAGCTAAACTTAAAGATGCGTATGTGTTTATTAAGAAAGCTAAAGAGACTGATTCTGTTTTACGAATGAACTGCGGGGAATTGGACAAATGCttcgacaaaaaaatattcgaatggGTTGAAGTAGAAAAGAAGTTTAGCTCGGTATATATGAAAAGAGAGAATGAAGAGGACTTTctcgaagaaaatattcaataccAAGATTGTACTCCAAAATATATTCAATCACAAACTCCTATTCCCAGTTCATTAATATCAACTGATGATGAGGAGAAAACTAATGCATGctccaaaatgcaagaaaaaatcgAATCTATGACTTGTGAACATTGTGGAAACATAATTTCTAAGAGACAGTTCTGGCAGCACACCTGCGATAACAAAAATCCACATCACATTGAAGGTGCAGTGGAGTGTATTATAAATGTTATTGAGGAAACTCCTGTAAAAATCAAACCCAACATTAATAGTATTCACGCCAGCATCAAGAAAGAAATGAGCAAGTCAACAAAAGCTAAACGatgttcagaaaataaaaaaaattatgaaatattatcCTGCAAAATATGTGGATTGTCTATGACGGGAAAACAACTCATGCGACATCCGTGTAATCGCGGctcagaaaaatttttatgcaagtCGTGTCcTCGCACTTTCAGACATCGCAACACTTTGATACAGCATGAACTtatacatgaaataaatagGGAAAGAAAATTCGCTTGTAACGTCTGTGGCagaaaattttttactcaaatggCTCGAAGAAACCATTTGAAAACACATGATCCGAGTCGAAAACCTCGATTTCATTGCGGGGACTGTGGCCAAACTTTCTTGTTTAAAGGCAACTTGCTGGTGCATCAGCAGAAGCATGCGGGTCAAACTATTCAATGTAATTATTGTCAAAAACGTTATGTTCGTTCGGTAGATCTGGAAGTCCATCTGCGAAGTCACACAGGCGATATGCCCTTTAAATGCGATAAGTGTGAAAAGGCATTTACTAAAAGATCTACACTTCAAAAGCATTTGCAATTACATGATGGCGTTCAATGGAAATGTGAAGACTGTGGTAAAGAGTACTTATATGAATGGACATTACAGAGACATCGTTTAGAGCACACAGGTTTGCCTTTAAAATGCTCCATTTGTGAAAAGGAATTTCCAGAAATGTATAAgaTAAAACGACACATTAAATGTGTTCACAAAGTAAATTTACTAGAACTAGAAAACTTCGTAGTGAGACTTAAAGAAAACAAGAAGCGTATACGTATACCAGGAATCGTTTCTGAAGCGAAAttgagTTCGATGGATATAAATACATGCAGGGCTTGTTTATTACAAAAAGATCCTAAAGACCTTTGGGATTGGTTCATGCCAATGGATAATATTGATGAGCCATTAACTGTATTGGAATGCTTTCAAATATGTACTCAAttggagttaaaaaaaacaagccCTATTGCACCTCACATAGTTAATATGCATTATCTGTGCAAAGCTTGTGTAGACGAACTTTTAACTACGTTTAAATTTATAAGGAAGGCCCAGAGGTCTGACTATGAGCTTGGTATCCAAGTGCAAAAATATGTTACCACATACCAGACAGTAGAGTTCGAATGGATAAATACACAAGCCGAAAACAGATCCTCTGTTAAAAATGGCGATTTCACGGAAAATTTCTTATATGAGGATGTAAATAAAGGTATTGAGTTATTTACGGGAATAGACTATTCCGAGGAGAACAAGTTCAATAATTACTCCATCGCAAAAGGGGAACTACACTctctaaaagcaaataaacaagaAATCAATCGGGATCATAATGACAAAAATGGATCAGAAAATAATATACCACACAATATCGAAATTGGCAAATGTAATGCAAGTGGAAGGGAAGTCAaacttaatatttctatttgtgAATACTGCAGTAAGGCTTTCGAAAGTAATGAGTTAAAACGCCATATAAAACGTTCgcattcaatgaattttttcctttgccATTCGTGCCCATCCACATTTAATGATGCTGCAGGTTTGAAAAAACACGAAGATATTCATAAAGCGAATAGAGAACGAACTATTAGTTGCAAAGAGTGCCAACGAAGGTTTTTCACTCAGCAGGCATATCAAAACCATACCAAAATTCATCAGGAAAACCGCGAGGCTAAATTTCAATGTGATCAATgcgaaaaatcttttttctataAAGGAAGTTTAAAACTTCATATGCAACTTCATAGCGGTCTATTATATGAATGTAATATTTGTTCAAAACAATATGCACGTTCTGTCGACCTTCGAATACATTTACGGAGTCACTCTGGCGAATTACCATATAAATGTCCGCAATGCGATAAGAGATTTAGATACGTTCATGTTTTGAATAAACACGTGCGGTACCACGAAGGTCATCGTTACACATGCAACGTGTGTGGAAAGGAGTATGCTCACCAATCAACAATGTTACAACATCGCAAAGAGCACACCGGCTTACCACTTCGGTGCTCTATTTGTGACAAAGGATTTGTGAAAAAATCTAaAATGAGGCGCCATATAGGCGGTGTACACAAAGTGAGTAATATCGAAGAGATTGACCAACttattgtaaaagtaaaaacaaaaaacatttatcgTGGTCGGGTTTtggaaatgtga
Protein Sequence: MESSRNKCRVCLRVENSVPLLNWNLPIEEINESLSYAICFQQCTQLNLALSRENIEKESSMIIYEYFCYSCAAKLKDAYVFIKKAKETDSVLRMNCGELDKCFDKKIFEWVEVEKKFSSVYMKRENEEDFLEENIQYQDCTPKYIQSQTPIPSSLISTDDEEKTNACSKMQEKIESMTCEHCGNIISKRQFWQHTCDNKNPHHIEGAVECIINVIEETPVKIKPNINSIHASIKKEMSKSTKAKRCSENKKNYEILSCKICGLSMTGKQLMRHPCNRGSEKFLCKSCPRTFRHRNTLIQHELIHEINRERKFACNVCGRKFFTQMARRNHLKTHDPSRKPRFHCGDCGQTFLFKGNLLVHQQKHAGQTIQCNYCQKRYVRSVDLEVHLRSHTGDMPFKCDKCEKAFTKRSTLQKHLQLHDGVQWKCEDCGKEYLYEWTLQRHRLEHTGLPLKCSICEKEFPEMYKIKRHIKCVHKVNLLELENFVVRLKENKKRIRIPGIVSEAKLSSMDINTCRACLLQKDPKDLWDWFMPMDNIDEPLTVLECFQICTQLELKKTSPIAPHIVNMHYLCKACVDELLTTFKFIRKAQRSDYELGIQVQKYVTTYQTVEFEWINTQAENRSSVKNGDFTENFLYEDVNKGIELFTGIDYSEENKFNNYSIAKGELHSLKANKQEINRDHNDKNGSENNIPHNIEIGKCNASGREVKLNISICEYCSKAFESNELKRHIKRSHSMNFFLCHSCPSTFNDAAGLKKHEDIHKANRERTISCKECQRRFFTQQAYQNHTKIHQENREAKFQCDQCEKSFFYKGSLKLHMQLHSGLLYECNICSKQYARSVDLRIHLRSHSGELPYKCPQCDKRFRYVHVLNKHVRYHEGHRYTCNVCGKEYAHQSTMLQHRKEHTGLPLRCSICDKGFVKKSKMRRHIGGVHKVSNIEEIDQLIVKVKTKNIYRGRVLEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -