Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:289749-301167[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.2e-06 0.00041 20.1 4.8 1 23 405 427 405 427 0.98

2 17 3e-07 1.5e-05 24.6 2.7 1 23 433 455 433 455 0.99

3 17 0.0035 0.18 11.8 5.3 1 23 461 483 461 483 0.99

4 17 8.1e-05 0.0041 17.0 0.4 1 23 489 512 489 512 0.97

5 17 3e-05 0.0015 18.4 0.5 2 23 525 546 524 546 0.97

6 17 0.001 0.051 13.5 4.7 1 23 626 648 626 648 0.98

7 17 0.0002 0.01 15.8 0.3 1 23 653 676 653 676 0.96

8 17 0.12 5.9 7.0 0.4 1 23 683 706 683 706 0.89

9 17 0.0054 0.27 11.2 0.7 1 23 1102 1124 1102 1124 0.97

10 17 0.00067 0.034 14.1 2.2 1 23 1129 1151 1129 1151 0.95

11 17 0.00067 0.034 14.1 1.3 2 23 1158 1180 1157 1180 0.94

12 17 0.00044 0.023 14.6 0.1 1 23 1185 1207 1185 1207 0.97

13 17 0.00044 0.022 14.7 0.5 2 23 1214 1235 1213 1235 0.97

14 17 1.1e-05 0.00055 19.7 0.8 1 23 1297 1319 1297 1319 0.98

15 17 7.7e-05 0.0039 17.0 4.0 1 23 1325 1347 1325 1347 0.98

16 17 0.00065 0.033 14.1 3.1 1 23 1353 1375 1353 1375 0.97

17 17 0.00085 0.043 13.8 4.6 1 23 1381 1404 1381 1404 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.2e-06	0.00041	20.1	4.8	1	23	405	427	405	427	0.98
2	17	3e-07	1.5e-05	24.6	2.7	1	23	433	455	433	455	0.99
3	17	0.0035	0.18	11.8	5.3	1	23	461	483	461	483	0.99
4	17	8.1e-05	0.0041	17.0	0.4	1	23	489	512	489	512	0.97
5	17	3e-05	0.0015	18.4	0.5	2	23	525	546	524	546	0.97
6	17	0.001	0.051	13.5	4.7	1	23	626	648	626	648	0.98
7	17	0.0002	0.01	15.8	0.3	1	23	653	676	653	676	0.96
8	17	0.12	5.9	7.0	0.4	1	23	683	706	683	706	0.89
9	17	0.0054	0.27	11.2	0.7	1	23	1102	1124	1102	1124	0.97
10	17	0.00067	0.034	14.1	2.2	1	23	1129	1151	1129	1151	0.95
11	17	0.00067	0.034	14.1	1.3	2	23	1158	1180	1157	1180	0.94
12	17	0.00044	0.023	14.6	0.1	1	23	1185	1207	1185	1207	0.97
13	17	0.00044	0.022	14.7	0.5	2	23	1214	1235	1213	1235	0.97
14	17	1.1e-05	0.00055	19.7	0.8	1	23	1297	1319	1297	1319	0.98
15	17	7.7e-05	0.0039	17.0	4.0	1	23	1325	1347	1325	1347	0.98
16	17	0.00065	0.033	14.1	3.1	1	23	1353	1375	1353	1375	0.97
17	17	0.00085	0.043	13.8	4.6	1	23	1381	1404	1381	1404	0.96

Sequence Information

Coding Sequence: atgaattttcggattaatataaatatttgccgtGTTTGTATGAAGTCGGATGATGGTCTTTCACTTGTGGATAACAAGGAATTAGGTGAAAAGTTTGTGTTTACAACTCATTTGaagCTCAACGACAGCGACGATATGCCCTCAATAATTTGCAGTAAATGCTCCAAGCGTCTCCAGATGGCTTACAGTTTTGTGAAATTAGCTCACGAATCAGAGGAAAATTTGAAAGCTTTTCTcaccaaaattaataaagatttcGAATTAGTAACAAATAAATCTTCCGAAACGTCGACTGTAAACGAAGACGAAGAAGATGATGAAGAGATCGCAATTATACTTGATGAAAGTTGTATAGATAAAGCGGCAGAAGAATCCGAAATGGTTTCAGAGCAAGCCGTTGGAAAAAATGATGAAAGTGCAACGCTTACATCCCAACTTTTAAGCAGAGAGAAACCGAGATGTGCGAGAAAGAAATCCGTTgataaaattccaaataattcagaaaaagtAACTCTAAACgcaaaaaaagatatttcaaaaaataccgATACAAAGGCAGTGaagataaatattaagaaagaaaatattggcGAAGATGTGAACACTTTCGAGTCCTTTGAGTCTGATATGCAAATAGAGACTGAATATGAAGAGGAAAGAAACGcagatttaaacaaaatcacTTCGGTTACTGAGATACAAAAGGGTACTTCTTCAGAGCACGACATCCAAATACTCGATTATACCGACGAAGAGTCACAAGTAGAGTTGGAAATATTAGAAGTGAACATACAACCGAGTGAAGATACACACAGTAGTCTAGAAGTAATAGAACCCCAAACGCAAAATAGCGATGGATTCCTTAAAGAGTATCAAGCAATGCTAGAGGAAGATGGTGAATATTTAGAAGATAATAGTTCGACTCAAGACAAAACCACGGAGGGGAacgatatgcatatgtacgatgAGGCTGAAGAGTTATTAGATGATACGGATGACGAGATAAAAGCAATGGATGAAGCTAATTTAGAAGACAATCATGATGTTCCCATCTCTACGCTGCTGAGGACGCATACTGAAGATATGggcaatgaagaaaatattcaagtaaCCAAAAGTAAAGCACGTAGAGGTCAATCTAAAGCCGGCGGCCATGTAACGACCGTAAAGGCAGCTAAGCGAACTGTTGATAGCTTAAGTGCCTCCAAGCGTTTCTACTGCCTGAAATGCCATCGTGACTTTAGCACTAAAACCAACCTAACACGTCATATGGCCACACATGATGGCAATCGGCCGTTCAAGTGCAATGTTTGTAACAAGAGCTTTACCCAGAATGTATCGTTAAAGCagcatatgtatacacatacggGTGAAAAGCCCTATCAATGTGAGATCTGCCACCGAGGCTTCACACAGTGCAAAAGTCTGGTGTTCCACATTCGAAGGCACACGGGCGACAAACCATTTCCGTGTGAAAAATGCGGTGCACTCTTCCGGCAGAAGGACGGGCTGAAGACACACATTCTTAAACGGCATACCATCAAATCCCAACAAGGCAATAAGGAGTTGACAACCTGCGCCATATGTAAACAGGTGTTTGCTGATAAAACTTTATTACAAGAACATATGAAGAAGCATTTAAACGACTACGTTCGTGTCGACTCGGCAATGTCATGTGCGAACCGTGAAATAAATTCCGACGAAAATTCTCAGGTTATATTCGACTATACGCGTATTGACGATGATCCGCTACACGATAAAGCGAACGCTTTCATAAGCGAGCCGACTACTGAAAGTACGGAAGACATTGGCGCCGCAGCACATGTGGTAGATCTTATGACAACCTCGGCCTTGGAGCCCAGTCGTGCAAAGAAGTTCCAGTGtcgcaaatgttttaaatgttttgccATCAAAAAAAACCTGCTCCGCCACTTGAGTATCCATGAAGCCTCAGACTTTCCTTGCGAGTCATGTGACCTTAGCTTTGCCACCAGTGATGACTTACATGCGCATACTTTAAGAGAACACGGAAGATCTGTGGAACTTTACGAATGCGGGCTCTGCGTATCAGTTTTCTCCACTGCAGGAGATATGCAGAAGCATTGTAATGTTGAACATGCGCAAAAATTTataaacaaGGTCCTAAACTTACacttccaaaaaaagaaaatggagatATTATGTCGCATCTGCGGAGGAGatcaaaatcttaaattttttcaaaacgacAAGCAGCTATTGGAATTGCTCGAACTTTGTGCGAACGTAGTAataaaagaaaatgatatgctaccaaaatttatttgcaaacgTTGTGAGGATGGCTTACTCTTCTCCTACCGCTTGCGTAAACAAAGTGAAGAGACGGAAAAGCGTCTGCGTCATGAAATCGAATCGCAAACAATTAGTACCACAACAGACATTGAAGATGAACTTAGTGCGTATAATATTCAACAGCGTGTGCCCTCAGTACCGCAAAATCGGGATCAAAGATTGATTTCTGATGTTGATAACAACATTTGCACTTCAACAAACCAAAGTGAGAAAACCTCACAATTAGTCGATGCCGAGCCGACACACGAGTTAACAGGAAGCAAAGATGTAGGAGTAGAACCGTCCCCAAATGAAACTTCTAAGGAACATGTAGTGGAAATACTAGATTTAGAAAATATGCCAGAATTATCTGATGAAGAGCGCCTACAAGTGGAATTACGAAAGCGAGGAGTAATTATCTGTAAGCGGGTATTGCCCGATACAAGCGGATCGACTACAGAACACAGTAAAGATCACGAGGTAATTGCAGAGAAGCGCATTCAATTAGATACTGTTAGTCAAATTATGCCTGTAGATGATACTGAGGGTTGTGAACAGCTGCCACAAATTGTGTCTTcagaaacatttgaaaatgatGCGTCAAATGAGGTTGATATTATTGAACTACTGGATGATGATGAACCAGAACGCGACGACAAACAGCAAGAAGAAAGTCGTTTTGAAGAATTGAAGTCGGTTGAAAATGAAGATactgaaataattgaagaaataatttcTTCAGCTGAAGAGGAGGAAAGTCAGTATAGATCTCTTAACGAACAAACGGATATTGTATACGAAGAGTCCGATAGTGATTGCAATGAACTAATTGATATAAATGAATGCCAAATGTATTTTACAAAAGTTGAGCATAATACTTTCGATGATGAAAACAGGGAAACTCGACGTACAACGATACAAGATAATAGCGTAGTAGAGTTCACAACTGTAATAAGCAGTAAAACGATTACGGAAGAAACGGTGTCTAATTATAACTGTGACATCTGCAATATAGATTTcagcaacaaatatatttatcgtAATCACGTTAAAATACATGAcgttaaaaattttgcatgtaCGCTATGTGACAAGAAGTTCTTAAGGCGTGATAGTCTAACAAGGCATATCCATGCTCACAACAACAAGGAGGAGTTGCACTGTCCGCTTTGCGAACGTACCTTTCAATCACGTTTCAATTTATCGCGCCATGCACGTGCAGTGCACAAAAATATGGGGTTCGTGTGCGACGTTTGTGGTCAGATATTTATGCGTTCCGATGTGCTCCAGCAGCACTTGGTAAAGCATAACACTCAAGGCGATGTGCAGTGTGAACTATGTCCAAAACgTTTCTTTGCTTTATCGTCTATGAGAAGACATATGCTCAGCCATGCAAAACAATCAGGAGAGGAAAATTTATCAAATGATACAACTGAGTCTGATGTTGGCACATCTAAAACTAgcgataaaaaggaaaaaacgaaaaaaaaaatttactgtatttACTGCGGCAAAATGTCGAAAGGTCATTTCGCACACAAAATGCATTTGCGTACTCATACGCAAGAAAAGCCCCATAAATGCGAAATATGCAGTAAAGCTTTTCGCACTTTAGCCGCTCTTACCACTCACGAACGTATACATGACGATGTACGACCATATCAATGTGAACATTGTCTGCTCTCTTTTCGACAACAAGGACATCTTAAGGAACATCGTATGATACACGAAGGCATTGCGCCACATGTGTGCAGCGTTTGTCAGCTAGCTTTTACCAAAAAGTGTaatatgcttgtacatatgcgcatacattCTGGGGATTATCCCTATAAATGTCTTATGTGTGGCGAGCAGTTTAATAGACCAACGCAGTTGCATAAACACCATTATAAGGTACATAAAAAAGATGTAGATGAGGATACAAATGGAATACCAGAAAATGTAAATGATGCTGAAGAGCTAAATCCTGAAGGCGACgtcgaaagtaaaaatttagcaaatgaACTGTCGGACAGCGATAGTGATAGTATTGAGATAATAGAAACAGAAAATGTTCCAGCTGCTTCGTCCATTCAAAGCAATACCATTGGCGACGATAACGACGATGAAGATTGCTACGAAGTAACGGTCAACGCTAACAAAGATGTAGCTGTAGAGACAAGTGTTACCGAAAATATAAGTGACgattttgttggtattaataaaGGTGTTGTCTTGGTGGTAGATGATAATGCGAAATTTAATAGCCTATTTATTATGGATGACTAA
Protein Sequence: MNFRININICRVCMKSDDGLSLVDNKELGEKFVFTTHLKLNDSDDMPSIICSKCSKRLQMAYSFVKLAHESEENLKAFLTKINKDFELVTNKSSETSTVNEDEEDDEEIAIILDESCIDKAAEESEMVSEQAVGKNDESATLTSQLLSREKPRCARKKSVDKIPNNSEKVTLNAKKDISKNTDTKAVKINIKKENIGEDVNTFESFESDMQIETEYEEERNADLNKITSVTEIQKGTSSEHDIQILDYTDEESQVELEILEVNIQPSEDTHSSLEVIEPQTQNSDGFLKEYQAMLEEDGEYLEDNSSTQDKTTEGNDMHMYDEAEELLDDTDDEIKAMDEANLEDNHDVPISTLLRTHTEDMGNEENIQVTKSKARRGQSKAGGHVTTVKAAKRTVDSLSASKRFYCLKCHRDFSTKTNLTRHMATHDGNRPFKCNVCNKSFTQNVSLKQHMYTHTGEKPYQCEICHRGFTQCKSLVFHIRRHTGDKPFPCEKCGALFRQKDGLKTHILKRHTIKSQQGNKELTTCAICKQVFADKTLLQEHMKKHLNDYVRVDSAMSCANREINSDENSQVIFDYTRIDDDPLHDKANAFISEPTTESTEDIGAAAHVVDLMTTSALEPSRAKKFQCRKCFKCFAIKKNLLRHLSIHEASDFPCESCDLSFATSDDLHAHTLREHGRSVELYECGLCVSVFSTAGDMQKHCNVEHAQKFINKVLNLHFQKKKMEILCRICGGDQNLKFFQNDKQLLELLELCANVVIKENDMLPKFICKRCEDGLLFSYRLRKQSEETEKRLRHEIESQTISTTTDIEDELSAYNIQQRVPSVPQNRDQRLISDVDNNICTSTNQSEKTSQLVDAEPTHELTGSKDVGVEPSPNETSKEHVVEILDLENMPELSDEERLQVELRKRGVIICKRVLPDTSGSTTEHSKDHEVIAEKRIQLDTVSQIMPVDDTEGCEQLPQIVSSETFENDASNEVDIIELLDDDEPERDDKQQEESRFEELKSVENEDTEIIEEIISSAEEEESQYRSLNEQTDIVYEESDSDCNELIDINECQMYFTKVEHNTFDDENRETRRTTIQDNSVVEFTTVISSKTITEETVSNYNCDICNIDFSNKYIYRNHVKIHDVKNFACTLCDKKFLRRDSLTRHIHAHNNKEELHCPLCERTFQSRFNLSRHARAVHKNMGFVCDVCGQIFMRSDVLQQHLVKHNTQGDVQCELCPKRFFALSSMRRHMLSHAKQSGEENLSNDTTESDVGTSKTSDKKEKTKKKIYCIYCGKMSKGHFAHKMHLRTHTQEKPHKCEICSKAFRTLAALTTHERIHDDVRPYQCEHCLLSFRQQGHLKEHRMIHEGIAPHVCSVCQLAFTKKCNMLVHMRIHSGDYPYKCLMCGEQFNRPTQLHKHHYKVHKKDVDEDTNGIPENVNDAEELNPEGDVESKNLANELSDSDSDSIEIIETENVPAASSIQSNTIGDDNDDEDCYEVTVNANKDVAVETSVTENISDDFVGINKGVVLVVDDNAKFNSLFIMDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -