Ccap011943.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceratitis capitata
Gene Symbol
-
Assembly
GCA_000347755.4
Location
NW:847151-860220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0057 0.29 11.2 0.2 1 23 204 227 204 227 0.94
2 22 0.13 6.4 6.9 0.1 6 23 236 254 232 254 0.93
3 22 6.3e-05 0.0032 17.3 0.8 1 23 309 331 309 331 0.99
4 22 0.0025 0.12 12.3 3.3 1 23 333 356 333 356 0.97
5 22 0.098 5 7.3 1.2 2 23 382 404 381 404 0.94
6 22 0.046 2.3 8.3 0.3 1 23 545 568 545 568 0.94
7 22 0.2 10 6.3 0.2 2 23 576 597 576 597 0.94
8 22 0.00046 0.023 14.6 1.2 1 23 603 625 603 625 0.97
9 22 3.6e-06 0.00018 21.2 0.2 2 23 632 653 631 653 0.96
10 22 0.011 0.55 10.3 4.5 1 23 659 681 659 681 0.97
11 22 0.00087 0.044 13.7 2.1 2 23 687 708 686 708 0.92
12 22 1.2 62 3.8 7.1 1 23 714 737 714 737 0.96
13 22 0.016 0.8 9.8 0.5 1 23 1071 1094 1071 1094 0.96
14 22 0.00099 0.05 13.6 0.8 1 23 1101 1124 1101 1124 0.96
15 22 0.23 12 6.1 1.8 3 23 1132 1151 1130 1154 0.64
16 22 0.00042 0.021 14.7 2.6 1 23 1155 1177 1155 1177 0.94
17 22 1.9e-05 0.00098 18.9 0.2 2 23 1186 1207 1185 1207 0.96
18 22 5.8e-05 0.0029 17.4 1.0 1 23 1216 1238 1216 1238 0.98
19 22 1.2e-05 0.00058 19.6 1.6 3 23 1245 1265 1243 1265 0.97
20 22 0.00085 0.043 13.8 2.1 1 23 1271 1293 1271 1293 0.97
21 22 2.8e-05 0.0014 18.4 0.5 1 23 1298 1320 1298 1320 0.96
22 22 0.00013 0.0066 16.3 1.3 2 23 1326 1348 1325 1348 0.97

Sequence Information

Coding Sequence
atgcaatGTCGGGTATGCATGCAGACACAAAGTCATATTCTGATGGATATGGGGCATGCGAGCTCTGAAGATGGCAAAACGCTTTTTGACTGCTTCAATGAATGTACTCAGTTACATGCAATGGCCAACGACACATTTCCATCAATgctttgcaagatttgtgtccaaaaaatgcaaattgcatATAACTTTAGAAAATGTGCTCTACAATCCAATGAATactttaaaaaactattaacaaAAAGAGATGAGTCTGAATCGCTAAAAAACACCACTGAGGAAATGTTTGCCCTAGaggtaatagaagaaaataacgATGATCCCTTAAATATGGATTTCGATGAAGCGTCGAGAGTGCTGAGAGAGCCAGAAGTAAAATTCACGCCGGAAGTTTATTCTATAGACAAATCTCCATACCACTATCTCGAAGAAGCTGAACTGTCAATTAATGAAGATAACAAAGAGGATATTGTTTCAAAAaccgaaattgaaattaattccaCCGCtgaggaaaattattttgaccAGTTTGAAAGCATAGTTGAGAAAGAATCTGAAAGTGATGAAGGAGGATATGAAACTGAAATTGAGCCAATGGAAAAAAACGCATATGCTTGTGAAATGTGCAAAGGTACTTATGCATTTAAGGCCGATCTGAGAAAGCATATAGCGCAAAATCATAAATCTGCAATAATTTGTATAAGTTGCTCAAAAGTATTTGATATGCCAGATGAATTGAGAATCCATAAGAAACTAGTACATGACACCGATTCCCCGGTACTATGTGATTTTTGTAAGGATAAACCAATAATGCCACGTAGTGAGATTCGTACACACTTTAAAGAGCATCATAGCAGCCGctatttcaagtattttccaCGCATACGAATAACACGAGCTATTGGTTCTGGAGAGCCTAcaacatacaaatgcaaatattgctGGAACATTTTTACAACCGCTTTCGAGCTAGAAGACCATGTAAAAACCCATATATTCAAATGCCCATTTTGCTCAAAGAATTTTAGTAGAATACGCACTTACTATAATCATGTAAAACGTTTGCATAATTGCTCTGCCAGCAGTTATCCACCAACACCATTTGTAGTCTATGGTCCTGACGCGGAAGATGAAAAACCTATTTATTGCAAAGCATGCAACAAAACTTATTTAAGGTTAGGATCTTATAACAgacatattaaacaaaaacatagaaaaagaTCGTTAACACATGAAACTGACAAAATTGATCTGGATAAAGTTCAGGAGAAAACGATAGATGATTTACAGCCAGTGGAACTCTTAAGTAGCCAACTTCAAATAGAATCCATTTTCCATTCGCCAGAACAGAGTCAAGTTTATGTTGAGAAACTACCTGAAATAATATCTGAGGAAAAACTGTCAGAATATCAACACTGCCCTAATAAAATTGAGGAAACTTACGATGTTACCCATACAGACGCCGGAGAATACACTGAGCAGTTACAAGAGTTAGATTATGATCCCAACGAAGATGAAATGACTTGTACTGTTTTGGGTGAAgaggaaaatttaaacaaaagttttgagaggcaaaaaaaatcgatcatcCGGAAAAAAGCAAACcgttcaaagcaaaaaaagaaaaatgaatatcTATGTTCATTTTGTCCACAAGTACTGTCGTCGAGAACAACATTGGAAATGCACGAAAATATCAAACATTTGAATGTGAAAACTCAAGAAGAATGTCcgatttgtaagaaaaaattaaagccaagtTATATAAGTACACATATTCAAATGGTACATAACGAAGAACGTAACTATGTTTGCGATATTTGTGAAGATtcttataaaaccaaaaatcagtTAAAGCGGCATAAAATGTTACACGATAAGGATAGTGGGTTGCCCTGTACTGTATGTGATAAAAAATTCACGGAGAGAGCAGATCTCAATGTACATATGCGCCTTCACACAGGCGAATTGCCATATGCATGTCACATATGTGATCGGCGATTTAGAATAAAAGTTCGTCTCACCTATCATTTGCAGCATCACgctaatattaagaaaaaatgtaaaatttgtgACAAAGAATTCAAGAATGGTACATCACTTCGAAAGCATTCATATGAACATACTGGTAATTTTCCTTACACATGTACCAATTGTGATTATCGCCATGTCAACCGTGAATATTTTTGTAAACATATGCTGAACAAACACGGGAAGGTAATGAGCGCTGATGAATTGTTTGCGATGTTCAAAGCGAATACCGGCCGCAACCCATACGTAAAAAAGGCAGAAGACTTGGAGAACATGAATATCAATTCAaaacaaaagaacaaTAAATCTACATCTGGTTGCACCATTATGCTTGTAGTCATAGCAACGGTGTCTgtgcctttaaaaaattattggataGAAGACATAAgtgcatttgatttgattttgtatttgatGGATAACATAGAAAATTCGGAAGGAATGAACTCACCGGATATTGATGTTAGCACTGAGGAAATGCGCTGTTGTCGTGCTTGTTTGGCGGTAGGATCAGAGGCTGAGCTTGTGGATTACATCGATATGAGAGAGTGTTATAGCACCGATTGCGGCAGTATTACATTATTAGAGTCATTTAATAAATGCACGTCCTTGAATGTTATAATAGAAGATAATAGTATGGAAGGATATCCACCATGTCATTATATTTGCGGACGTTGTCTCTTAGATTTGAAGCAAGCGTATGAGTTTATAACCCGCGCGCAGTTAAACAACCAGCtattaaaagtacaatatgcaCATTCCAAATCTACAACAAAGACCGATGATGAGTTGCAAGGCACAAAAAGCGAAGGTGAATCGGTGAGAAGTCAAAACTTTGATATCGTATTCACTGTTTCAGAGAATGAGGAGGAGGAATTTGGTAAAGAggtatgattttaattttgtgtttttaatagTCTTTGTACTTAGATAAACTATATCCTTCAGGAATGTACTATCGCAAACTcatcattgaatttaattaatgagAGCAATGTACCACTTAATAATAAGGAACTTTCATCAACCACACTCATTAGTGTGGAACGAGTTTTTTACAACGAAAGAGGTGGTAAATTACAAGCGGCTGCGGAAGTTTCAAAAACGAATCATAAACATTCGAAAATAACTGGCGAAGAGTACTCAAATTTAGATAGCGCACTTAAAGCAGGATTTGAGTTTAAATGCGAATTTTGCACTGCAATATTCGATTTTCAAAGAGATTTGCTGCAACACTACGAAGTGGATCAtgCTGAAAAGACACTGAATTTCCCCTGCGATTTATGTAAAAATCGATTTGTGACGAAGAATGCCCTACGTTTACATCGTCGTCAAGTGCATCAAAAAGATGAATATACAGACTGTGAGCACTGCGGACGTACTGTATTGAAAACGTTCTATAATGTGCATTTAAGGCGTCATCAGCAACAATTTCTATGTAGCAAATGCccaaaaataTGTGCTTCACGCTATACACTTAAAAAGCATATGGAATTGCATTCGGAAGAACGTGATCGTAATATTGAATGTGGGGATTGCGGTAGACGTTTTTATACGTTAGAGAATTTGCAACTACACCAAACCATACATATTTCACCCGAAGATAGAGCAATATTTGAGTGCACTGTTTGTTCAAAGACATTTTTGCGTAAATCGAACCTTGGCTTACACATGCAGATGCACAGGGGAGAAACCATGGATTGCCCGCATTGTAATAAACAATTTGTTCGACGTAAGGATCTCGAAATACATATACGGTTTCACACTGGTGAATTTCCTTATGCATGTACGATGTGTGATCGTAAATTTGCCATTAAGGGACATCTTAACTATCATGAAAAACGTCATCTGGGTGTTCGATACAAGTGTGATGAATGCGAGAAGACATTCATAAATTTAGCAGGTCTGCGGCAACATCAATTCGAACATACTGGTATGCCATTAACGTGCAACGTGTGCAAACGAGGTTTTCCAACTAaatttaaGGTTCGCCGTCACTTGCGTACTGTGCATCAgcatctattcgaaaaaactgGTTATACTGATGctttagcaaaaaaatacataaccaTAGACACTTCTTCTAACAAAACAGATAAGAAAAGGATTGCTTGTGAAAGTGTACTTGAAGATACGATCGAAATGCTGGAGGAGCATGCAAACGATATTCCTTTAAATATGTTAGCAGCTTAG
Protein Sequence
MQCRVCMQTQSHILMDMGHASSEDGKTLFDCFNECTQLHAMANDTFPSMLCKICVQKMQIAYNFRKCALQSNEYFKKLLTKRDESESLKNTTEEMFALEVIEENNDDPLNMDFDEASRVLREPEVKFTPEVYSIDKSPYHYLEEAELSINEDNKEDIVSKTEIEINSTAEENYFDQFESIVEKESESDEGGYETEIEPMEKNAYACEMCKGTYAFKADLRKHIAQNHKSAIICISCSKVFDMPDELRIHKKLVHDTDSPVLCDFCKDKPIMPRSEIRTHFKEHHSSRYFKYFPRIRITRAIGSGEPTTYKCKYCWNIFTTAFELEDHVKTHIFKCPFCSKNFSRIRTYYNHVKRLHNCSASSYPPTPFVVYGPDAEDEKPIYCKACNKTYLRLGSYNRHIKQKHRKRSLTHETDKIDLDKVQEKTIDDLQPVELLSSQLQIESIFHSPEQSQVYVEKLPEIISEEKLSEYQHCPNKIEETYDVTHTDAGEYTEQLQELDYDPNEDEMTCTVLGEEENLNKSFERQKKSIIRKKANRSKQKKKNEYLCSFCPQVLSSRTTLEMHENIKHLNVKTQEECPICKKKLKPSYISTHIQMVHNEERNYVCDICEDSYKTKNQLKRHKMLHDKDSGLPCTVCDKKFTERADLNVHMRLHTGELPYACHICDRRFRIKVRLTYHLQHHANIKKKCKICDKEFKNGTSLRKHSYEHTGNFPYTCTNCDYRHVNREYFCKHMLNKHGKVMSADELFAMFKANTGRNPYVKKAEDLENMNINSKQKNNKSTSGCTIMLVVIATVSVPLKNYWIEDISAFDLILYLMDNIENSEGMNSPDIDVSTEEMRCCRACLAVGSEAELVDYIDMRECYSTDCGSITLLESFNKCTSLNVIIEDNSMEGYPPCHYICGRCLLDLKQAYEFITRAQLNNQLLKVQYAHSKSTTKTDDELQGTKSEGESVRSQNFDIVFTVSENEEEEFGKEV*F*FCVFNSLCT*INYILQECTIANSSLNLINESNVPLNNKELSSTTLISVERVFYNERGGKLQAAAEVSKTNHKHSKITGEEYSNLDSALKAGFEFKCEFCTAIFDFQRDLLQHYEVDHAEKTLNFPCDLCKNRFVTKNALRLHRRQVHQKDEYTDCEHCGRTVLKTFYNVHLRRHQQQFLCSKCPKICASRYTLKKHMELHSEERDRNIECGDCGRRFYTLENLQLHQTIHISPEDRAIFECTVCSKTFLRKSNLGLHMQMHRGETMDCPHCNKQFVRRKDLEIHIRFHTGEFPYACTMCDRKFAIKGHLNYHEKRHLGVRYKCDECEKTFINLAGLRQHQFEHTGMPLTCNVCKRGFPTKFKVRRHLRTVHQHLFEKTGYTDALAKKYITIDTSSNKTDKKRIACESVLEDTIEMLEEHANDIPLNMLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-