Ccap001135.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- bab1
- Assembly
- GCA_000347755.4
- Location
- NW:1351830-1566133[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1 5.5e+03 -3.3 0.9 4 18 610 625 609 627 0.75 2 2 2.2e-17 3.8e-14 51.6 0.0 1 43 722 765 722 767 0.95
Sequence Information
- Coding Sequence
- ATGACTTCCAATTCACCACCACCACAGAGCGCCGGCATACGGCCGCTAGCAGCTGGTGAGAGCGCGACATCTTCATCACCATTTCGTTCGCTACTGTCCAGTCCATTGTTGTCACGACAACGTGCCAACATCGCAGCGCGCACATCGTCCACATCATCAGTTTCATCGCCCGCGTCGCCGCAGCTTCCGCCACCGCGTCCCGCTTCCGTGTTGCCGAGTTTTCTTGGCAGTCCACTGGCAACACCGCCGCCACCATCGCAAGCATCTGTGGCCACAGGGTTGAGTGTAGATTTAAGTCAAGAAGATCATGGTATACGCGAACAAGATCCCAAGCCAAGTCCGCTACTGCGTGAAGAGTCACCCATACCAGCCACATGTACGTCCAGCGCACGCACGCCCACACCCGGCGGAGAAAACACGGGCACACGTGCTGAAACACCGGCTGAGCCCAGTACGCCTGGTGGTACGCAACCCATTTCACCACACTCTTCAACGGGTTCCACAGCGACGGTGCCACAGCAATTTTGCCTGCGTTGGAATAATTACCAAAGTAATTTGACGAGCGTTTTCGATCAACTCTTACAAACAGAGTCGTTTGTCGACGTGACCTTGGCATGCGATGGCCGCTCGATTAAAGCGCATAAAATGATACTCTCCGCTTGTTCGCCCTATTTTCAGATGCTCTTCTCAGATACACCTTGCCAGCATCCCATTGTGATAATGCGCGATGTCAATTGGGCCGATCTTAAGGCGATCGTGGAATTCATGTATCGTGGTGAGATCAACGTTAGCCAAGATCAAATTGGTCCACTTTTGCGGATAGCGGAAATGCTGAAAGTACGCGGTCTAGCGGACGTGAGCGCGGGTAGTGTATCCGCGGAGGAAGCAGCAGCTGAGCGTTTGTTGAAAGATTTACATTCTCCCTCCAAATCGAGTTCACCCAAAAGAGGTGGTGGCGAAAGCGTCTCGCCTTTATTAAAGCGAGAACGGAAGGACTACCACGATGCACTGGGTGAGACAGAGGATCCGCTTGCATATCTAGATGCTGAGAAAAAGATGCGCTTGGGACGCACGGACTGGAATTTTGGGGCTGCGACCAGTGGTAGCAGCATTAGTGGTGACAATCTCAGCGGCAGTAGCGCCAATCACGAGTTGCGTCTATCACCACTTCTCTTGCcgcatcatcaacaacaactacaacaacaagctCGTCATGTCCGCAAACGACGTTGGCCTTCAGCAGACATGATCTTTAACCCACCACCGAGTCCATTAAGTGGTCTTATTGCTGCCGAGCGCGCAGAGCGGGAGCGTGAGCGAGAACGAGAGCGTGCGAGAGAACGTGATCGTGATTGTACAATTATAACACCGCCACAAACGACAGCAGCAAGCGGCATAGCTCCCTCAAGCACCACACAGTCTAGTGCGCGTAGCACGTCGCGCCTAACACCTTCACTACTCGACACCGCCGCGAACTTAGACCTACCCTCACCATCAACGACTCCGGCAGCATCAATGTTGCGTCCAATGCGCACACCACCAGGTGTCGGCGTACATCTCACGCATCAGCAATCGCAACAACATGcgcaccaccaccaacaacagcagcagcaacaccaacagcagtCGCAATCTCAACAGTCGCATCTTCTACACGCCCACCGCTCATCACCAGCGTCATCAGCGACAACGCCCACACTACCGTCCAGCTTGATCAGTGGTCAGCTGACAGCGACGCCTGTCGGCGGCAGCGGTAGCAGTGCCGGTCGTTCGGAGCGATTTAGTGGCGCAGCTGATTCGCGATTTGCACTGGGCTCACAAGCGGCTGCGATGGCGGCCGCTGTGGCAGCACAAATGGATTTGGGCGCCATGGGCATGCCGCATGGCACTGGCGCGCCACCGACACATGGTCCACCGCATCATCATGGCTCTTCACTGGCCGACGATCTGGAAATAAAACCGGGTATTGCGGAAATGATACGCGAGGAAGAGCGGGCCAAAATGCTGGAGAACTCACATGCTTGGATGGGCCCCTCAAGCTCTTCGACAATTGCAgACAGCTACCAGTATCAGTTGCAATCGATGTGGCAGAAATGTTGGAATACCAATCAAAGTCTCATGCATCACCTGCGTTTCCGAGAACGTGGTCCCCTTAAATCGTGGCGACCCGAAACAATGGCCGAAGCCATATTCAGTGTACTCAAAGAGGGTCTCTCACTATCGCAAGCAGCACGCAAATACGACATACCCTACCCAACCTTCGTACTGTATGCTAATCGTGTGCACAACATGCTCGGTCCGTCCATAGATGGTGGGCCAGATTTGCGTCCGAAGGGACGTGGTCGGCCACAACGTATACTACTCGGCATTTGGCCCGATGAACATATTAAGGGTGTCATTAAGACGGTGGTCTTCCGCGATGCAAAGGAACTGAAGGATGATAGTTTGGTGCCACATTTGCCATATGGTCGGCATTCGCCCATGTTTCCATTTCAGGATGGTCCATTAAACTACCCCGGCATGGGTGGTCCTTGTCCGAATGGTGTACCCACACCGGCTGGTGATCAGATGTCACAAGAGGCCACAGCTGCTGCCGTGGCTGCTGTGGCCCACAATATACGTCAGCAAATGCAGTTGGCTGCCGCCGTACAACATCAACATCCGTCGGAGGGCCCTGGTGGTGCTGGTTTGTTTAATATACCACCGCATTTACAGCCACACTTAGCCGCTGCAGCTGCTTCTGGACCTGCGGGATCCGCATCCGGTGTGCACGGTTCAGTGCCACTACCAAAAACGAGTATTTCTCCTGCTCTCAGCACTACATCGAATCCCGGTGCCGGCGCAATGTTAGGCCCACGACATGCTCCATCGCCCTGTGGTCCTGGCCTGCCGGGTCTCCCGCCTAACTTACCGCCCAGCATGGCGATGGCTTTGCATATGGGTCGTTGTGATCCAACCGCTGTACTCagccagcaacaacagcatcagTTGCAACATCTGCACATGCAGCAACAGCAGgcgttacaacaacagcagcatcaacagcagcagcatcagcagcagcaacaacagcatccTCTTGGTTACGGTGTTAGTTCCATGTCACATCATGGTGGCCCCACTGCTACCGCCACCTCAACCTCATCTTCCAGCCATCTTTATCAGCCACAACAACATCAGCACCAGCACCAACAGGCgcaaaatcagcagcaacaacaacagcatcagcaacagcatcagcatcagcaacaacatcagcaccaacagcaacaccaaaagcaacaacaccagcagcaacaccaTCAGTCAGTCAACCTTGGCGGCACGGCATCTAAAATGAAATGTCCATCACCCTCATCTCTACTTGAACACCAACGCCCCAGTCCAAGCGTCGATTCACATTTACACTCAACGCTTACCGAGCTGGGCTTAGATATGGGCTTTAAAACCTCGCGAAGTAGTGCTTATTCACCGACACGTCTCTTCTCCGAGGACCTCGCAGCCTTGGTGGGCGCAAGTGAGGATTCTCCACCAGATACGGCAGCGACCTCGACCATCGTTAGCAGAACCAGCACAGTAACGACATCGGCCATGACGTCCGGCAGTCACGCGGATGTTAGTATAACTTCCAGTGCAACGAGCGGTAACATAAGTTCCagtaatataaaaatcgaaCCCATCACAACAAGTAGCGAATAA
- Protein Sequence
- MTSNSPPPQSAGIRPLAAGESATSSSPFRSLLSSPLLSRQRANIAARTSSTSSVSSPASPQLPPPRPASVLPSFLGSPLATPPPPSQASVATGLSVDLSQEDHGIREQDPKPSPLLREESPIPATCTSSARTPTPGGENTGTRAETPAEPSTPGGTQPISPHSSTGSTATVPQQFCLRWNNYQSNLTSVFDQLLQTESFVDVTLACDGRSIKAHKMILSACSPYFQMLFSDTPCQHPIVIMRDVNWADLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVSAGSVSAEEAAAERLLKDLHSPSKSSSPKRGGGESVSPLLKRERKDYHDALGETEDPLAYLDAEKKMRLGRTDWNFGAATSGSSISGDNLSGSSANHELRLSPLLLPHHQQQLQQQARHVRKRRWPSADMIFNPPPSPLSGLIAAERAERERERERERARERDRDCTIITPPQTTAASGIAPSSTTQSSARSTSRLTPSLLDTAANLDLPSPSTTPAASMLRPMRTPPGVGVHLTHQQSQQHAHHHQQQQQQHQQQSQSQQSHLLHAHRSSPASSATTPTLPSSLISGQLTATPVGGSGSSAGRSERFSGAADSRFALGSQAAAMAAAVAAQMDLGAMGMPHGTGAPPTHGPPHHHGSSLADDLEIKPGIAEMIREEERAKMLENSHAWMGPSSSSTIADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKDDSLVPHLPYGRHSPMFPFQDGPLNYPGMGGPCPNGVPTPAGDQMSQEATAAAVAAVAHNIRQQMQLAAAVQHQHPSEGPGGAGLFNIPPHLQPHLAAAAASGPAGSASGVHGSVPLPKTSISPALSTTSNPGAGAMLGPRHAPSPCGPGLPGLPPNLPPSMAMALHMGRCDPTAVLSQQQQHQLQHLHMQQQQALQQQQHQQQQHQQQQQQHPLGYGVSSMSHHGGPTATATSTSSSSHLYQPQQHQHQHQQAQNQQQQQQHQQQHQHQQQHQHQQQHQKQQHQQQHHQSVNLGGTASKMKCPSPSSLLEHQRPSPSVDSHLHSTLTELGLDMGFKTSRSSAYSPTRLFSEDLAALVGASEDSPPDTAATSTIVSRTSTVTTSAMTSGSHADVSITSSATSGNISSSNIKIEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00193646;
- 90% Identity
- iTF_00303879;
- 80% Identity
- iTF_00303879;