Basic Information

Insect: Ceratina calcarata
Gene Symbol: -
Assembly: GCA_026724355.1
Location: JAKKRE010000001.1:6955452-6959046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0022 0.27 12.3 6.7 1 23 285 308 285 308 0.97

2 14 0.0055 0.67 11.1 2.7 2 23 341 362 341 362 0.95

3 14 1.2 1.4e+02 3.8 4.6 1 21 383 403 383 404 0.89

4 14 0.00033 0.04 14.9 0.7 1 19 503 521 503 523 0.96

5 14 0.00013 0.016 16.2 0.2 3 23 533 554 532 554 0.96

6 14 0.036 4.4 8.5 0.3 3 21 605 623 604 624 0.92

7 14 0.00076 0.092 13.8 1.2 1 23 631 654 631 654 0.96

8 14 0.0074 0.9 10.7 7.3 1 23 665 688 665 688 0.94

9 14 0.014 1.7 9.8 0.1 3 21 726 744 724 745 0.95

10 14 0.012 1.4 10.1 4.2 1 23 752 775 752 775 0.94

11 14 0.11 14 7.0 0.1 2 20 839 857 839 859 0.93

12 14 0.04 4.9 8.4 9.2 1 23 866 888 866 888 0.98

13 14 0.00051 0.062 14.3 0.1 2 23 899 921 898 921 0.93

14 14 0.055 6.7 7.9 7.6 3 23 979 1000 977 1000 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0022	0.27	12.3	6.7	1	23	285	308	285	308	0.97
2	14	0.0055	0.67	11.1	2.7	2	23	341	362	341	362	0.95
3	14	1.2	1.4e+02	3.8	4.6	1	21	383	403	383	404	0.89
4	14	0.00033	0.04	14.9	0.7	1	19	503	521	503	523	0.96
5	14	0.00013	0.016	16.2	0.2	3	23	533	554	532	554	0.96
6	14	0.036	4.4	8.5	0.3	3	21	605	623	604	624	0.92
7	14	0.00076	0.092	13.8	1.2	1	23	631	654	631	654	0.96
8	14	0.0074	0.9	10.7	7.3	1	23	665	688	665	688	0.94
9	14	0.014	1.7	9.8	0.1	3	21	726	744	724	745	0.95
10	14	0.012	1.4	10.1	4.2	1	23	752	775	752	775	0.94
11	14	0.11	14	7.0	0.1	2	20	839	857	839	859	0.93
12	14	0.04	4.9	8.4	9.2	1	23	866	888	866	888	0.98
13	14	0.00051	0.062	14.3	0.1	2	23	899	921	898	921	0.93
14	14	0.055	6.7	7.9	7.6	3	23	979	1000	977	1000	0.92

Sequence Information

Coding Sequence: ATGAATATAGTGTGTAAGGGACAATTAGAACCTTCTGATAATAGTATCTCTGAACAATTGAGTATTTTAAGTGAAAGACCTAAAAAGTTCACTAAAACATTTCTGAAGAGTTTGGATAGTCCACCTAAAACATCTCTGAAGATATTAAGTGTTCCGTCTGAAATGTCTCCGAAGTTAAATGCTTTGCATGGTTCGCCTCCGAAGATGAGTAACAATACCGTAACTCCGAAAAAGATGAAACAGAGTAGCATGGACAACTTCGTCATAGTCTCGAAAGTAGAAAAAACTGTTGTCCCCAGCGTTGCTCAAAGTAGTGTGGGTGATATTGAGAAAAATTCTACTACTAATGTGGATCTTAAAAATGAAACATGCGGAACACCACAGACTGTGTCTCAGGATACACGGCTTTTGCGAAGTGATCCCTCATGCGGAGTAAATCCTACAGTTATGATACCTTTGACAAAGAAGGAAGCACAAACTGAATTTACGGATCCTATTGATTCTGCGAGTTCTACCGATACCCATAAAGTATCGTACAATCTGAGGCCATCAAGATTTTCTTCTTACTCTACGTTATTTATGTTTGAATCGATGCTATTCGAAGACATATATGGATACACAACACAAGAATCTTGTCGAACGCTAAGAAAAAACGGCTCGCGCAAGAGGAAGGCATCAGAACCAAGGATAAGTGAAATACAGTGCAAAGAATGCGTAGTCCGATTGGAGCGAATTGATTTGGAAGGGAATAATATTAAGTTGAATAAGAGCTGTGCCCTTCAGGTGGATTCTCGAGAGCTTGTAACTAGTTCGGTATTTTCGAATGTCCCTTTAGCGAAATGCTCCGGTACGTATAAATGCTATTGTTGTAAAAAAGTGTTTTCGACGAAAAACAAACTGAGTAAACACATGGAAACATTCCATACGATTTACATATCTAGCATCTGTTCTGCTCGCTACATGTCCATGGACAGGCTAGTAAATCATTACCTGCGCCAGCACATTCCTTTCCCGCGCAGAGAATGTTGCGTGTGTTTTAAGAACTTCGATTCGCTCACGACCTTGAGACGTCACATGGTCCTACATTTTAAGAAGAAGATTAGATCGATCAATGCTGAAGCAAATTGCATTGCGTTTAAGAAGCGACACAAGTGTAAAGATTGTCGCAAGCGATTTTGGCTGCATTCGTGTTTAGAGCAACATGAAAAGGTGTGTCGTCGAGAAAACACCATATTGAATAAAGAACACCTAGACTCCGTTAAAATAGCTACATCGTCAGCTTCAGGAAGATCTGAAAATTCTGAAACGGAAGAGGTACAAACATTCGATGCAAAGTCATATTCTTTAGCGTTACTTGAAAACGAAGGACAATCATCGGAAACAGAAAGTTCAGATATTTCTGCCAGATCCACGATACGTTCACCCACAGGGGCGACTAAAAGGAAAGGCTCAGGTGTTGCATCTGCGACAGGTAACCAAATTGATGCACTGAACAGGACGAGGAAGTATCCTTGTTTCGTTTGTGGAGAAAAATTCAAAACGCCCCAAAACTTGTGCGAACACGAGGACTTATACTTTGGACTGGCTAATGAAAACTGCTATATTTGCAACACAGCGTTTCCCAGTAAAGATCTGTTACAACTGCACATGCTTTCCAGTCATAGCATTAATGGTAGTGCACACTATACTTGCTTTTGCAGATTTTGCAATCAAGGTTTCCATAACATGAACAAATTTTGGATTCACGTACACCATATCCACCCCGCTCATACTACATTCGCGATGAAAATTAGATCGAGGAACAGCCCAATGTGCAATATATGCAAGTTAGTGTTTGAGTCACATAGTCGACTCATCGACCATAAAATGTACTACTACAAGGAACAAACTTTCGAATGTACCGTTTGTAGAGAATCGTTCCAAGGGCTGTATCAACTCCGTCACCACATCCAATTGGAGCATTATCTCGCTACCCAACGAGATTTGTGCATTCACAAGTGCAATGTCTGCAAAGAAAGTTTCAATTATGAATCTCATTTACATGCACATAAATTGCACGCTCATTCGGATGCTACTAATGTCACTGTCACGCAAGACCATACCTACATGGTACAAACGAACAGATTTGTCACAACCCCGGAGGATATAACGCGAGTACCAGTAAAAACATATGGGTGCAACGTTTGTGACTTGTATTTTATTAACGAGAAGGATCTGAGAATGCACCAAATGGAGTATTCCAATGGTGGGGACTTCTTTTGTAACAAGTGCAATAGGAGGTATTATACTCTCGCTCTACTCGCCAAACATTACTGTCTGAATCACACCGAACCTGACCAAAACGTTATGAAATGTGATCGCTGCAACGAGGTGTTGTTGACGAATATGTCGAAACAGTGTCACGAGAAACATTTTCACGGGAGGAATATCGGTCTACTGACAGGAAATAGCATGCTGAATATGAACTTCTTTAAGGAACTTAATAGCAGTGAGCTTCAGAAAGATGACGGCAATGTGTGTACAACTTGTGCGACAAAATTCGACGACACGGTTAGTTTGAAGAATCATCTGTTGGAATATGCGGACATAGGTTCATACAGCTGTAGCCATTGTCAACGAAAGTTTACGAAATTGTGTTTTCTAGAAAAACATAAGATGAAGCACTCGACTTCGGACAACAGTTTGATCACAGATTATTGTCCGATATGTAATGAGGGGTTTACAGATTCCGCGAACGTTCGTATCCACGTGTTGCATCTTCATCGATATGAGACATTTGGCTTGAACCAAAATTCGCTTCCGGTGCCTCATTTGTATACTACTGCGAAGGAGTTCCTGGCGCATGATTTACGAATGCACAGGAAAAGTCGCAAACAGCTGTGGCCATCAGCAGTGACTACGTTGTTAGCTCTGCAGATTAACATGGATGTATGTTGTGATAAATGTGGGAAGATGTTTCAAAACAAGAAATGTTTCAAGAATCACTTTAAGGCATTTCACGCGACTGATAAGGAGAGTGAGCGTCCGCCTGAGAAAAATGTTAAGAAAATAAAAATCGGTTGGCAAAATTATGAACCAGACTCGACTGATCCGTCACAAGTTGTTAGCAATGTCGGTAAAGTAAGAGTCAAGAAATTTGCGAAAATGTTGAATTAA
Protein Sequence: MNIVCKGQLEPSDNSISEQLSILSERPKKFTKTFLKSLDSPPKTSLKILSVPSEMSPKLNALHGSPPKMSNNTVTPKKMKQSSMDNFVIVSKVEKTVVPSVAQSSVGDIEKNSTTNVDLKNETCGTPQTVSQDTRLLRSDPSCGVNPTVMIPLTKKEAQTEFTDPIDSASSTDTHKVSYNLRPSRFSSYSTLFMFESMLFEDIYGYTTQESCRTLRKNGSRKRKASEPRISEIQCKECVVRLERIDLEGNNIKLNKSCALQVDSRELVTSSVFSNVPLAKCSGTYKCYCCKKVFSTKNKLSKHMETFHTIYISSICSARYMSMDRLVNHYLRQHIPFPRRECCVCFKNFDSLTTLRRHMVLHFKKKIRSINAEANCIAFKKRHKCKDCRKRFWLHSCLEQHEKVCRRENTILNKEHLDSVKIATSSASGRSENSETEEVQTFDAKSYSLALLENEGQSSETESSDISARSTIRSPTGATKRKGSGVASATGNQIDALNRTRKYPCFVCGEKFKTPQNLCEHEDLYFGLANENCYICNTAFPSKDLLQLHMLSSHSINGSAHYTCFCRFCNQGFHNMNKFWIHVHHIHPAHTTFAMKIRSRNSPMCNICKLVFESHSRLIDHKMYYYKEQTFECTVCRESFQGLYQLRHHIQLEHYLATQRDLCIHKCNVCKESFNYESHLHAHKLHAHSDATNVTVTQDHTYMVQTNRFVTTPEDITRVPVKTYGCNVCDLYFINEKDLRMHQMEYSNGGDFFCNKCNRRYYTLALLAKHYCLNHTEPDQNVMKCDRCNEVLLTNMSKQCHEKHFHGRNIGLLTGNSMLNMNFFKELNSSELQKDDGNVCTTCATKFDDTVSLKNHLLEYADIGSYSCSHCQRKFTKLCFLEKHKMKHSTSDNSLITDYCPICNEGFTDSANVRIHVLHLHRYETFGLNQNSLPVPHLYTTAKEFLAHDLRMHRKSRKQLWPSAVTTLLALQINMDVCCDKCGKMFQNKKCFKNHFKAFHATDKESERPPEKNVKKIKIGWQNYEPDSTDPSQVVSNVGKVRVKKFAKMLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -