Basic Information

Insect: Ceratina calcarata
Gene Symbol: RREB1
Assembly: GCA_026724355.1
Location: JAKKRE010000006.1:1920620-1926434[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.001 0.12 13.4 0.2 1 23 40 62 40 63 0.96

2 16 2.5e-05 0.0031 18.5 0.2 1 23 76 98 76 98 0.98

3 16 2e-07 2.5e-05 25.0 1.3 1 23 104 127 104 127 0.98

4 16 0.052 6.3 8.0 0.0 1 23 219 243 219 243 0.91

5 16 2.4 2.9e+02 2.8 2.6 2 23 249 271 249 271 0.92

6 16 1.5 1.9e+02 3.4 1.1 1 19 327 345 327 347 0.94

7 16 0.18 22 6.3 0.1 1 23 456 478 456 478 0.96

8 16 6.4e-05 0.0078 17.2 0.1 1 23 487 509 487 509 0.98

9 16 0.0011 0.13 13.3 2.8 1 23 515 538 515 538 0.97

10 16 0.00071 0.086 13.9 3.0 1 23 922 945 922 945 0.96

11 16 0.00058 0.071 14.2 0.1 3 23 1211 1231 1209 1231 0.97

12 16 0.52 63 4.9 6.0 1 23 1237 1260 1237 1260 0.97

13 16 0.0017 0.21 12.7 2.2 1 23 1298 1322 1298 1322 0.97

14 16 0.73 89 4.4 2.4 1 23 1402 1425 1402 1425 0.96

15 16 0.018 2.2 9.5 0.3 2 23 1477 1498 1476 1498 0.92

16 16 0.0086 1 10.5 4.8 1 23 1504 1526 1504 1526 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.001	0.12	13.4	0.2	1	23	40	62	40	63	0.96
2	16	2.5e-05	0.0031	18.5	0.2	1	23	76	98	76	98	0.98
3	16	2e-07	2.5e-05	25.0	1.3	1	23	104	127	104	127	0.98
4	16	0.052	6.3	8.0	0.0	1	23	219	243	219	243	0.91
5	16	2.4	2.9e+02	2.8	2.6	2	23	249	271	249	271	0.92
6	16	1.5	1.9e+02	3.4	1.1	1	19	327	345	327	347	0.94
7	16	0.18	22	6.3	0.1	1	23	456	478	456	478	0.96
8	16	6.4e-05	0.0078	17.2	0.1	1	23	487	509	487	509	0.98
9	16	0.0011	0.13	13.3	2.8	1	23	515	538	515	538	0.97
10	16	0.00071	0.086	13.9	3.0	1	23	922	945	922	945	0.96
11	16	0.00058	0.071	14.2	0.1	3	23	1211	1231	1209	1231	0.97
12	16	0.52	63	4.9	6.0	1	23	1237	1260	1237	1260	0.97
13	16	0.0017	0.21	12.7	2.2	1	23	1298	1322	1298	1322	0.97
14	16	0.73	89	4.4	2.4	1	23	1402	1425	1402	1425	0.96
15	16	0.018	2.2	9.5	0.3	2	23	1477	1498	1476	1498	0.92
16	16	0.0086	1	10.5	4.8	1	23	1504	1526	1504	1526	0.97

Sequence Information

Coding Sequence: ATGTTCTTTAATTTGATTTCAGTTACTCTGAAGAGTGGCCTCGACCAGGAACACGAGAAGGAAGCGCAAGTTGATGCTGCATCATCTCCATCGAGCGCCGAGTTACCGGAAAGCGCGTATCCCTGTCCAGCGTGCCCGACAGTTTTGCCGAGTTCCCGGGAACTGACTAACCACCTCCGCAACCACCATTCGCCACGCAGCACCGACTGCAGCGGTGAGGATGAGtattcctgcagggtatgcaacaaggtgctcagctcagcaagttccttggacaggcacatgctggtgcactccggagagcgtccgttcaagtgcaagtattgcgacatggcgttcaccaccaacgggaacatgaacaggcacctgcgaacggcgcatttgggcgcgtcgcctcacagctgcacgGACTCCGAGGGCAGTAGCGACTCCGAGAGGCCGGCGAAGAGGCGACACATAGAAGAGTACAACAACAACGAGGTCACCAAGAGGAACTCGCCGAACTTCATGGGTAGACGCGAGGGAGGATCACCGACCTTGTCGAGCGGCCAGAAAAGTTATCCAAACGACAACGCGGGCCAAAAGAGGCACAAGACGTTGCTGAACAACTCGAGGATCGAGACGAAATCGAGGCCTGAGGACTTCCTGATCGCTTACGATTGCCCCGTCTGCGGCAGATCGGATTTCGCGACCAGCGCCCTGCTGGAGTCGCACCTGGAACGAAGCCATCCAGACTTCCCCCCGAAGTGCGAACCGTGCAATCTGTCTTTCAAGAGTCACAGAGTACTGAATTTGCACCGGTTTATGTCCCATTTCTCGGAGCACGCGATAGCGAATTCCACGAGAAACTCGAGAAACTCAGTGGTAGGCTTTAAAGATCTGACGTTCGTTGACTTCTCATCCGGAAAGTTCCCAACGATAGCCAGGGCAGTCTGCGAACAGTCGTTGCACCGGCCGGCCTCGGGCGAGGTCGCAAAATTCCAGTGCTCCAAGTGTCTGTACGCGTTCCCATGCAGATCCGCGTTGAACGACCACGAGACCGACTGTGGCACGGCCAACTCTCAGATGAAGACGAGCGACGACAACCAAAGTAGAAGAGACGACTTCTTCGCCGGTTTGGATCTGCAGAACAAGGCCAAACAAGGAAAGGATTTCGCCGATATTCAGAGCATGATATCAGTCACGTCCGGACCTATCCTGCAGAATTTCCCGCGATCGGACGCCAGCACACCTGAAAGCAATATGAAATTCAATCCCAGTCTCAGCTCGTCCGGCTCTTCAGGAACTTACTCGTCGGAATGTCACGAAGAGGAGGCGCAAGATGCGTTCGCAGCTGAATTTAGGAGAATGAAATTGAAGGGCGAGTTTCCGTGCAGACTCTGCTCTGCTATATTTCCTAATCTGAGAGCTCTGAAAGGGCATAACAGGGCGCACATGGGTGTCGCACCAGGCATGCCGTATCCTTGTAATATGTGTCCGTACACCAGTGCCGATAAAGCCACTCTGGTCAGGCATCTGAGGTCGCATAACGGAGATAGGCCATACGAATGTTCTCTGTGTAACTATGCCTTCACTACCAAAGCCAACTGCGAGCGCCATGTCAGAAATCGTCACGGGAAATTGACCAGGGAGGATATCAAGAGCGTCCTCATTTATCACCCGAACGAAGACTCGACGAACGAAAGCGTCGAACGAAGCTCGCCGAGAGTACCGAAAGACGACGTCAGGAAGAGTCTCATCTATCCCGCGGAGCGAGACGAGCCCCAGCATCCGGCGCAGATGCACTATCCGTCGGTGCCGATGGAGGCCAGGGGTGAAATCCGGATAATCGAAGAGGCGAAACTGCACAACTCAGCGATCCCGATGCACAATCACCAGTTCGAGAAGGGCGACGCGTTCCCGAGGCCGGGGCAGCCGATCGAGCTGACGCAACGAATTCGTGAAGATGACGTTATGAAACCCGGCTGTCAGGACACGAAGTCGGATTACTTGAAGCTGGACGACGACTTGGAGTCGAGGTCGTCGGAGGGCAGCGTCTCTCTAGTCAGTGATACCAAATCAGAATCACACCAAAGAATGCATGCTAGTCCGATGAACCTGAAGAAGAGTCGGAACATGTCCGAAAGCGCCGGGGAGGACGGTCCATTAGATCTGTCAATGGACGTACTCGATCTCAGCAAGAAACGGAAGAAGGAGGAAAGTGACTTCGCCGCTCAGGATCAATTCGACCAGAGCCAGAAAGATCTGTACAATGCAAGCCAACTGCTATTGACCGAGGCACTCCTGAAAGCTGGCCAGAGCACCTCGCAGTCACAGCTGCATGTCCTGTACGCCAACACTCTTTATAGAAACTTCGAACGAATGGGGCCGTTCCAGCCCACCGTCGGTGCTGGAATTTTACCATCGTACATGTTCAACCCTAACGTATTCGGCCAGGACTACTCGATGAAGGAAAGGCTGCAGAAGGAGTTGGTAAGAGGATTACAGCTAACCAGCGGTGGTACATTGGTTGAACCTATAATTAACTGCAAGCCTCTTACGTCTGGTTTCGATGCGTTTCCCCAAACAAGAGATATCAACGCGCAGTCCGCAAACGAGCAAGGAAATTACGCGAAACTGATGGCCTCTAAATTGCAGAACAAAGGGATGCCGAGCCGCGAGAAGACGGGCAGCTTGTCATCCACGAATTCTGTCAGGATGGTCATCAAAAACGGAGTCCTGATGCCGAAGCAAAAACAGAGACGGTACAGAACTGAGAGACCGTTCTCATGCGAACACTGCTCAGCAAAATTCACCCTCAGAAGTAACATGGAGCGGCATATAAAGCAGCAGCATCCGCAGTACTGGACCCAGAAGCCCAGAGGAGGCCACTCGACGAGAGGAAGACCACCATCGAGTCACCCGACGTTACTGCAGAACCTCGGACAGCCTCCGTCTCAAGTAACCCAATCATACAGTAGCATTCTGCCAAAGATCGAACAGTCATCGAACGCGGAATATCCAAAGCATCCGATTTCGGATCAAGTCAAATACGCCATCCTTGCTCAGCAGTTGAAGAGTAACAAAGTTGAGGAGAATGATTCCGAAGAAGAACTAGTAATAGATGAAGACATGCATGATAAAGATAACCAGGAATCTCAGGAACAGAAAGAGAAGAGTTTGTTGCGGGGACAACTGGAAGACGCGGACGTTACTAACGAGTCTGCGGCGAGGGAAGATGAAACGGAGAGCCAGAAAGACATCTCGGAAAATATTACTACGGAATCTGTGAAGAACGACGATGCTGAGAACGAGAAGGCGTCTGACGGTGAAAAATCAAGAGAGAAGAGTCCCAACAGGGTTTTCAACTCTGAGACAGTCGAGGTGAAACAAGAGAAAGTCGAGGACGGAGCCGACCTGGCGAGTGTGTCGGAACTGCTGGACAACGCGTCACAGCAGTATCAACAGTTTCAGCCGCAGTACCTGAGCGACGAGGACGGCCTGGTAGCGTCGAACAGCGATTGCAACAATTCAGGCAGCGATGAAAAATCAGACTCGGTGAATTCATTAAACTCGGTGAACGACTCATCGAAGAAAAAGAAGAAAAAAAAGAAGAAGTCTGCATACTCGATGGCGCCAAATCGTGTCATCTGTCCATATTGCGAAAGGCCGTTCCCCTGGACTTCGTCCCTCAGGCGTCACATCCTCACACACACTGGCCAGAAACCGTACCAGTGCGTTCACTGCTCCCTGTTGTTCACCACCAAATCGAACTGCGATCGTCATCTACTAAGGAAGCACAAGGCAAATCCGAACAAAATGCGCAGAGCGAGGACCGAGAGTTCGTCACCGGATTCTCAAGTAGTCGTCAACAACAGCTCATTCTCGATGAGAAACGTCCCCGAGAGGCCCTATAAGTGCAACCAATGTCCGAGCTCAACTTTCTCGACGTTGGGCAACCTGAAAAAACATCGTAATACGAAACACGCGAGGAAATCGCGCTCAGACACTCCTTCCAGCGAGCCTCACAATAGTCCCCCGGGGTGCTCGAAACAAAACAACGAACAAAGCGACTATGACAGCCAGTCATCGAGCGCGTCCGAGGGTTTGGAGACCTCGTCGTTGCCGGGAACTTCGAAGTCGAGCATGAATCGAGGTAATAACGACATGCCTAAATCGAGGAAAACCTCGCCGAGATCATCACCAGGGCCCGGCGAAGCGGCCTTCAAATGCTATTTGTGCGATTGCGGCTTCGCCGATAGGCAGGGCTGCGTAGAACACATCAGGATCAGCCACGAAGCGTCTTACGAGATGCTGGAGGCGAAAGGAGCATTGGACATGGCCCTCGACGGACAGGACCAGTTGCAGCCACGACCGTCGCGTCAGCAGCATGCCAGTGACATTGAAGAGAAGAGAGGCCGCTTCCCAGACTACCGCAACAGAAAGGTGGTAtgcgcattctgcataaggcggttctggtccgcggaggacctgcgtcgtcatatgaggacccacaccggtgagcggcccttcgcctgcgacatctgctaccgaaggttcaccctgaaacacagcatgctgcggcacaggaagaAGCACGAGTCCATCGACTCGACGATGTACGTCGGGACCAGCGGCGATGAGGACAATTCACCGACCCAACCGCCGACGACGCTGCGTAGTCAGCAACAACCACCGACTTCAGTGGGCACCGGAAGCTCTCTTACGCAGGACAGAATCTCTTTGCCGATCGTTGCCTCAGTGGCGACCGGTGATGCGGCGCCAAATGAATTGATTCAGTTCAATCCGTACGAGAGTCTGACTTCGCTTGCACGTAATCTAGCCAGGATCCCACAGCCGCCAGACGTGCTCGAAAACCAAGACAACGATTTGATCTCCAATATGCTCGGTATAGAGGATAAGGACTTGATAGAACAAGCCTTACAGGCGTCCGCCGATGATGCCGCCAAATTGCTGGGAGTAAAACACAGTCAAGAGTGA
Protein Sequence: MFFNLISVTLKSGLDQEHEKEAQVDAASSPSSAELPESAYPCPACPTVLPSSRELTNHLRNHHSPRSTDCSGEDEYSCRVCNKVLSSASSLDRHMLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHLGASPHSCTDSEGSSDSERPAKRRHIEEYNNNEVTKRNSPNFMGRREGGSPTLSSGQKSYPNDNAGQKRHKTLLNNSRIETKSRPEDFLIAYDCPVCGRSDFATSALLESHLERSHPDFPPKCEPCNLSFKSHRVLNLHRFMSHFSEHAIANSTRNSRNSVVGFKDLTFVDFSSGKFPTIARAVCEQSLHRPASGEVAKFQCSKCLYAFPCRSALNDHETDCGTANSQMKTSDDNQSRRDDFFAGLDLQNKAKQGKDFADIQSMISVTSGPILQNFPRSDASTPESNMKFNPSLSSSGSSGTYSSECHEEEAQDAFAAEFRRMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVAPGMPYPCNMCPYTSADKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNESVERSSPRVPKDDVRKSLIYPAERDEPQHPAQMHYPSVPMEARGEIRIIEEAKLHNSAIPMHNHQFEKGDAFPRPGQPIELTQRIREDDVMKPGCQDTKSDYLKLDDDLESRSSEGSVSLVSDTKSESHQRMHASPMNLKKSRNMSESAGEDGPLDLSMDVLDLSKKRKKEESDFAAQDQFDQSQKDLYNASQLLLTEALLKAGQSTSQSQLHVLYANTLYRNFERMGPFQPTVGAGILPSYMFNPNVFGQDYSMKERLQKELVRGLQLTSGGTLVEPIINCKPLTSGFDAFPQTRDINAQSANEQGNYAKLMASKLQNKGMPSREKTGSLSSTNSVRMVIKNGVLMPKQKQRRYRTERPFSCEHCSAKFTLRSNMERHIKQQHPQYWTQKPRGGHSTRGRPPSSHPTLLQNLGQPPSQVTQSYSSILPKIEQSSNAEYPKHPISDQVKYAILAQQLKSNKVEENDSEEELVIDEDMHDKDNQESQEQKEKSLLRGQLEDADVTNESAAREDETESQKDISENITTESVKNDDAENEKASDGEKSREKSPNRVFNSETVEVKQEKVEDGADLASVSELLDNASQQYQQFQPQYLSDEDGLVASNSDCNNSGSDEKSDSVNSLNSVNDSSKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRARTESSSPDSQVVVNNSSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRNTKHARKSRSDTPSSEPHNSPPGCSKQNNEQSDYDSQSSSASEGLETSSLPGTSKSSMNRGNNDMPKSRKTSPRSSPGPGEAAFKCYLCDCGFADRQGCVEHIRISHEASYEMLEAKGALDMALDGQDQLQPRPSRQQHASDIEEKRGRFPDYRNRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFACDICYRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEDNSPTQPPTTLRSQQQPPTSVGTGSSLTQDRISLPIVASVATGDAAPNELIQFNPYESLTSLARNLARIPQPPDVLENQDNDLISNMLGIEDKDLIEQALQASADDAAKLLGVKHSQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -