Ccal012922.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000012.1:8702421-8705001[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.9 6e+02 1.8 0.3 1 10 298 307 298 320 0.87 2 15 0.0057 0.7 11.0 1.5 1 23 328 351 328 351 0.92 3 15 4.7e-06 0.00057 20.7 1.9 1 22 357 378 357 381 0.91 4 15 0.08 9.8 7.4 5.3 1 23 459 481 459 481 0.93 5 15 0.0025 0.31 12.1 0.5 1 23 488 511 488 511 0.92 6 15 0.00088 0.11 13.6 3.1 1 23 517 539 517 539 0.97 7 15 0.00016 0.02 15.9 2.1 1 23 545 567 545 567 0.99 8 15 4.8e-06 0.00059 20.7 1.5 1 23 573 595 573 595 0.97 9 15 0.00047 0.057 14.4 0.1 1 23 608 631 608 631 0.96 10 15 0.0033 0.4 11.8 6.3 1 23 647 670 647 670 0.95 11 15 0.00031 0.038 15.0 0.4 1 23 678 701 678 701 0.97 12 15 0.00058 0.071 14.2 0.7 1 23 707 729 707 729 0.97 13 15 0.00031 0.037 15.0 5.1 1 23 735 757 735 757 0.98 14 15 1.6e-05 0.0019 19.1 3.3 1 23 763 786 763 786 0.98 15 15 0.00056 0.068 14.2 1.3 2 23 792 813 792 813 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGCCAGAAGACCTTTTGATTTGCCGTTTATGTGGTGTAAAACTTATAGAAGGAAAATACAAATATATCTTCAATGAATCTACAGACTTGATATGCAGGATAAAAGAAACATTACCAATTTCTATATCTATTGATGATGATGGCCCAAAATACATATGCTTATCGTGTTACGAAAAGATCAGTTCTTATTACAAATTCGTTCAAGATGTGGTAGAACATTCAAAACGATTGGAAAATGCATCGGAAATCAAATCCTTCTTTGGCTCGTCGAAAGATGTACCAAATATTTCACAAATTCGTAGCGATGCCGTCTACCCATGCCCGAATTGCAACGTAGACTTAATGATTTTATTAGTTAGTAATCTGCAAGGCTGTGACACCTTTCAAATCTCTTTAGCTATGGTAAATGATGCGAACAAAAAGTATATTACAAGAGCGGAGAGTAAAAATGTAGAGTTCCTCAATAATGTTGGAATGAATGAGCTTTTCAAACACGAAGAGAAAATAGAAACTGTAGAGAAGATCGAAGATACGTCTTATCAAGCGAATGTTAAACAAGAAGATAATATAAATTTCATCGACAAACAATGCTTAGAAACTAAAGGAAAGAATGAATTAAAAAAGCACTTCAATGAATTTGACTCTTCTGATTCTCCCATACCAAAAATCTTGAAATTGGCAGAATTATCTTCTGTGCCTAATGAAAACATATTGGGCTGCGATTTCGGTTCTGCAGACCTATCAGTAAAAAATGAGCCAGAAGGTGACAATGCTTACTGTGCAAACAGTGAAAGCGAGAAGAACGCGTATGCAACTGATTCGCAAAACATTATCGAAGACGACGATGCACATGACGACAATGACGAGTACAAATCTTGTTTAAAATACGTGTGTAAATTATGTGGTGCACGCTATCTCTCGCATTTAAAATACGAATTTCATGTGGAGAGGCACAGAGCAGGTAAAATACATAAATACGAATGTACCGTATGCGACAAGGAAACAAGAACTGAAAATCTATTATGGGATCATTATTTTCATACGCACAAAAGCTTGCAACGTTACGTCTGTACAGAATGCGGTAAAGTATTTAGGAAACGGTCCAGACTGAACGTCCATCAAAAGAACTTCAAACACTGCGGCATGAAACAAATACAAATTGATTCGAGCGAGCATACGATCAACGGGGATGATGCAACGCAAACCACACGGAAACAAGCTTGTGTGAACTGCAATCTTTGCGGTAAACTGATATCAGATTTAGACCCGGATGCTATTAACGATTTAGTTACTTGCGCTACGTGTGAAGATTCTACGCTGTCCTTAATGGTAGACGGAAACGAGACGAAAGTGATATGTCCGCGACAGTATCATTGCTCGAAATGCCCGAAGCACTTCGTGCGAAAGGAGAGACTTGAGTTTCACGAGATGCGGCATAATGAAAATATGAACGAATTTGTTTGTAGTACTTGCGGGAAGGAATTTAAAGCTGAAAACTCGTTGTACGAGCATTATCTCTTTGTACATAAAGGCGCGAGACCTCACATTTGCGAGTTGTGCGGTAAATCGTTTCAGCTGAAAGCTAGACTAAAAGAACATCATCGAATTCATACGGGTGAACGACCGTATCAGTGCGACATTTGTGGCCAGCAATGCAGAACTACAAACGCTCTGAAACTCCATAGAAAAATTCACTTTTCACATAACAGATATGCTTGCAATATATGTAATAAATCATTTACTAAGAAACAGAACATGAACGAGCATTTAGAGAAACATTGGAAGACTGACAAGAGCGTGACGTTACCGCAGTTGTTCACATGTCCGATTTGCGTGGAGGATTTCCCTACGTATCGCATGCTGAAGTATCACATGATGGGAATTCATGAGATAAATAATCAGGACCCAATTTTGATCAAGCAGAAACCATGGCACGAATGCCGAGAATGTCACGAGAAGTTTAAGCATCAAATGTCTTTGAAGGCGCATAAAGAGAGGGTGCACGAAGGGAAAGTAAATCCCGTTTACCAGTGCGACATTTGTAACGCCACGTACAGAGTAAAACAACTTTTAGTAAATCATATCACCAGCAAGCATAACGGTGAGAAACGTTATAAGTGCGCACAATGTGAAAAGGGTTTTAACGACACCAAATCTTTATACAATCACGTATTGTTGCATACCGGGAAAAAACCGTACGTCTGCGAATATTGTAACATGAGTTTCAGGAGGAAAGACTCTAGGGATCATCACCGTAGGAAACATACAGGGGAACAGCCTTATCAGTGCCCGGACTGTGGCGAGTCGTTTTCTACCTACAATCATCGGTCTAAGCATCGGAAACGAGAGCACGGGGAAGGAGATCCCGAGTGTCCTGAATGCGGACAAAAGTGCACCAGCCAACAGGAGATACGAATACATTTAAATAAACATTTGGGAGAGAAATTGAAGGAATTACAGAATTCAGACGATGTCTAG
- Protein Sequence
- MDVPEDLLICRLCGVKLIEGKYKYIFNESTDLICRIKETLPISISIDDDGPKYICLSCYEKISSYYKFVQDVVEHSKRLENASEIKSFFGSSKDVPNISQIRSDAVYPCPNCNVDLMILLVSNLQGCDTFQISLAMVNDANKKYITRAESKNVEFLNNVGMNELFKHEEKIETVEKIEDTSYQANVKQEDNINFIDKQCLETKGKNELKKHFNEFDSSDSPIPKILKLAELSSVPNENILGCDFGSADLSVKNEPEGDNAYCANSESEKNAYATDSQNIIEDDDAHDDNDEYKSCLKYVCKLCGARYLSHLKYEFHVERHRAGKIHKYECTVCDKETRTENLLWDHYFHTHKSLQRYVCTECGKVFRKRSRLNVHQKNFKHCGMKQIQIDSSEHTINGDDATQTTRKQACVNCNLCGKLISDLDPDAINDLVTCATCEDSTLSLMVDGNETKVICPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFVCSTCGKEFKAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQQCRTTNALKLHRKIHFSHNRYACNICNKSFTKKQNMNEHLEKHWKTDKSVTLPQLFTCPICVEDFPTYRMLKYHMMGIHEINNQDPILIKQKPWHECRECHEKFKHQMSLKAHKERVHEGKVNPVYQCDICNATYRVKQLLVNHITSKHNGEKRYKCAQCEKGFNDTKSLYNHVLLHTGKKPYVCEYCNMSFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNHRSKHRKREHGEGDPECPECGQKCTSQQEIRIHLNKHLGEKLKELQNSDDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -