Ccal011537.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000013.1:5982198-5984867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.4 5.4e+02 1.9 0.0 1 19 357 375 357 377 0.71 2 12 4.3 5.2e+02 2.0 1.6 1 20 380 399 380 401 0.87 3 12 3.1e-06 0.00038 21.3 4.2 2 23 445 466 444 466 0.97 4 12 8.6e-05 0.011 16.8 0.2 1 23 472 494 472 494 0.97 5 12 3e-06 0.00036 21.4 0.9 1 23 500 522 500 522 0.98 6 12 2e-05 0.0024 18.8 3.3 1 23 528 550 528 550 0.98 7 12 0.00016 0.019 16.0 1.0 1 23 556 578 556 578 0.98 8 12 5.2e-07 6.3e-05 23.8 0.5 1 23 586 608 586 608 0.98 9 12 6.7e-05 0.0082 17.1 0.1 1 23 614 636 614 636 0.94 10 12 2.7e-05 0.0033 18.4 1.9 1 23 642 664 642 664 0.98 11 12 8.3e-05 0.01 16.8 0.6 1 23 670 692 670 692 0.97 12 12 0.023 2.8 9.1 5.3 1 23 698 720 698 721 0.95
Sequence Information
- Coding Sequence
- atggctgtcgtcaaggaattcgattatctatgccgtctatgcgcgacgaaaactggcatactgatgggattgccgatcttcgaagccggcgatcagatgcgcaacattgacaagaagatagccgcgtgcttgccagtccagGTATCTATGACCGATCAATTGCCGAAAGTGGTGTGCGAAGAGTGCGCGTACAAGTTAGACCAGTTGTTCGATTTTCGTGAAAAGTGTTTACTCACTGAGGGGCTGTTCATGGAAATGTTGAAAGAATTTTCTAAGGATGACGTCGTTCATATATCTAAACGGGATTTAGAAGAAGCAGAAGAAATAAACAGGATCCAAAGGAATATCGATAGAATACAAAGTGATATTGAAGATGCACAGAATCGTGTGACTTCGGGAGACACGGGAGAGACTACTATACACACGATGCAGGTCATGGATGAAATGGATCTAGCTGGTGGTGAACAGGTTGTCACCCAGGAAGAAATGGGCCAACAGGACACAGATATTGAAGTCACTGGTATTGATTGTTTGGACGGAGACACTGTCAGAATGGTGGACGAACATATACGGGGGGTATCTAATCATCAAATAGCAATGCACTTGGAAGGCGACATGACCGTCGTTGGGAATTTGACGGTCAGCAGTCATTTAAGTCAGTTAGGAATAAATTATGTTACTTCCATAAGTCCTGAAGATCAGAACAGAGAGCCAATCGTACATTACTGTGACAGTGTCAAGTACGAGTCTGTACCAATAAAAGAAGAAGAGTATCACAGACTGCAGGAGAGATTAACTGCTAAGGATTCTTTAAGTGTACTTGAAAATAATGTGCCACATGAGAGTTTTGGAACTGCACAACCAGAGACTGGAAGCGATATAGAAGAAACACACGTGATCAAGAACGAAGCCTCGAGACACGCTGTTCGAACAAATACGATGGCATCGACGAGTCAAGTGACAACAGGGAATGCCGAGATTTTAGTAGAATACACGAAAAGAACGAAACACGCGTTATTAGAGAGCACGTTAAATAATCCTACAATCGATGAAACCGGATCGCACTGGTACGTGTGTCCGTTTTGCAACGAGGCAATACTAGGTTCGAGCAATATGATAACACATTACGAACAATATTTCTGTTGCTGTCCTTGCGGTTTATATTTTACAAGCGTAGACGCGTTAAGTGTACATAAAGAAAGATGCGACGCGGAGAAAGATAAAACGATAAATAAAGAAAAGGAGGTAATGGAATCGGAATTGACTCCTGAGAATGACGCGAATATAGAGGAAAAAAAGCAAACGGCGGTGAGACAGAAGTGGaccccgaaagtttgcactcattgcgggaagcagtacagaacgaattataaactgcaagagcacatgcgtaaacataccggtgaaaagccttttcagtgtgtgacctgtgacaaagcgtttcgtagtaaaatcggactcgcacagcactcggccacgcacaccggacaattcgattacaattgctctacgtgcggtaaaggtttccagtcgaaaagttatctcgttcttcaccaaagagtacactcggatctaaagccgtttccttgcaacacttgcgggcaacacttcaaaacgaaacagtcgctgctggaccatcagaataggcatttaggcgtgaaaccctacgtctgcgagatctgtggccgaggtttcataactaagggactttgcaagagtcatcagaagatacactcgggcatggacaaccgtcagtatccctgcgtagtgtgcaacaagatgttcgtcagtaagagttatctgaacacacatctgcgcattcacaccggcgagaaaccgtatttgtgcgaggtttgcggcaaaggatttgtgacgcgcgtcgatctgaaaattcactcgacgatgcacaccggcgagaaaagttttaaatgcgacatgtgcggcaaggtattcgctcgaagagcggctttgaggtgtcacagaaggttacacaccggtgaacggccttacagatgcgacgtgtgcggcaaaacgttcacgcagttcaccccgatggcgattcataaaagattgcacacaggcgagagaccgtacgaatgcgacgcttgtgggaaaacgttcgtatcgcggtcgacgatgatgtgccacaagaagaagcatcacggcgcagcgcccacacAGAAGGAAGAATCTGTTCCTCGGCAAGGCGAAACAAAAAACGAAATCGCACTTCGGGATACCCAGGACAGAGTCCAGACAAACGCGGATTGA
- Protein Sequence
- MAVVKEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLLTEGLFMEMLKEFSKDDVVHISKRDLEEAEEINRIQRNIDRIQSDIEDAQNRVTSGDTGETTIHTMQVMDEMDLAGGEQVVTQEEMGQQDTDIEVTGIDCLDGDTVRMVDEHIRGVSNHQIAMHLEGDMTVVGNLTVSSHLSQLGINYVTSISPEDQNREPIVHYCDSVKYESVPIKEEEYHRLQERLTAKDSLSVLENNVPHESFGTAQPETGSDIEETHVIKNEASRHAVRTNTMASTSQVTTGNAEILVEYTKRTKHALLESTLNNPTIDETGSHWYVCPFCNEAILGSSNMITHYEQYFCCCPCGLYFTSVDALSVHKERCDAEKDKTINKEKEVMESELTPENDANIEEKKQTAVRQKWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCDKAFRSKIGLAQHSATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFVTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHGAAPTQKEESVPRQGETKNEIALRDTQDRVQTNAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761134;
- 90% Identity
- -
- 80% Identity
- -