Ccal013037.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000012.1:9616866-9625218[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00079 0.096 13.7 0.4 2 23 257 278 256 278 0.95 2 11 0.0035 0.43 11.7 0.9 1 23 286 309 286 309 0.95 3 11 0.00014 0.017 16.1 3.2 1 23 360 382 360 382 0.98 4 11 5.4e-07 6.6e-05 23.7 1.5 2 23 432 453 431 453 0.97 5 11 2.9e-05 0.0036 18.2 0.7 1 23 458 481 458 481 0.96 6 11 4.4e-06 0.00054 20.8 0.3 1 23 517 539 517 539 0.98 7 11 7.5e-07 9.2e-05 23.2 0.9 1 23 549 571 549 571 0.96 8 11 2.1e-06 0.00026 21.8 1.2 1 23 577 599 577 599 0.99 9 11 1.1e-05 0.0013 19.6 0.2 1 23 605 627 605 627 0.98 10 11 8.1e-05 0.0099 16.9 4.6 1 23 633 655 633 655 0.98 11 11 0.00032 0.039 15.0 0.4 1 21 661 681 661 682 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAGCCGAAAACAAAGCAATTCGACGACGCGTACGAGAAAATTTACGGTGACGAGTGTCGGATTTGTTTGAAAAGGGCTGCTGAGATTTGTGAACTTTTTCGGAATGGAGATACTATATCCCGTAAACTTATGGCTGTTGCCTCCGTAAAGATTGAAGAAGGAGATGGTTTACCTTCGGTGATTTGTTCGCTTTGTAATCAACGTTTGGACGCATCATACGATTTTCGGTGTCAGATACAAAACTCGGACACAAAGCTACGTGAAATTCTAAAACTCAAATCGTCCTCTAACAATTCTGTAAGCAGTGCCAGTATAGTTACAGCGATAATCGCTGATGTTATATCCAGTGTAATATCTTCTGAAAAGGAGAACACAGAAAAGCAAGAAGTTTGTACAACAAATTTTTATTCAGACAATTTCTGCTTCACGAAAGAGGAGACGTCGTTCTGTCTCACTCCAGAGAAGAATCTGTTCTGTTATGAGAAGGACAGTCAATTAAATAATATAGAGGAGAGAAAGAGTCTAAATAATGTAAATGTTTATAAAAGTTTATTGGATGATGATTCTGTTAGACAGATAAATCCGATGAAAGAAGAAGAATTGTCCTCGTTGCACGATCACATGGTGCAGCAGGATACTTCTTTAAAAGAAGACCGTAACGAGATAATATCGGATAATCATCAAATGTTAGATGAATCATCGAGAACTGATGGCATTCAAGACGAAGAAGAGAAACCATTGATTGCACGCACAACTAGATTGCGTTGTACACAGTGTATCAAATCCTTCCGTTCGAAAATAGCCTTGCAGAGACACGCTATTGTACATAAACGTAAAACTAAGCTACGTTACGTCTGCTATGTGTGTGATAAACAATATTCGACGTTGGCGAAAGTTAAAAATCACGTCGCAATTTGTCACGAAGCGCATGGTAGGAAAGAAAACATAGAAGACAAGAGAGTGAATTATGAACAGAGTCTACAAGATAAAAGAATTAACAATATTCAAGATAAAAGAATAAAATTACAAAAAACTGATGATTCCTCTAAAGAGCAACGAAGAAGCATGAAATATACGTGCAAAGTGTGTTCGAAACAATTTACGTATCAGAAATCTTTTATTACGCATGCCAAGAGTCACCCGGAATATAAATCAGAGGAATTGGACGATACCTCTCAGTGTTCGATGAAAGAAAGATCGACCGAAGCCGTTGAAGAGGATGACGAGAATGAAGAGGAAGAAGATGAGGAGGACGAGGAAGACGAGAACCTACCCGCCAAAAGCCTACAGTGTACTCAGTGTGGGAAACTATTTGCTACGAAAAGAAATCTGAAAAGGCACATTTCCACGCACAGTGGATTGAAGTATACCTGTGGAACATGTGGCAAAGGATTCTCGAGAGTAGACAAATTAAAGGATCACGAGCAATCGAAACACAAGTCCGAAATGTTTGATAGCTCCGATATGGATGACAAAGATGACATGGATAGTATGAGTAAAGTCGACATGGAAGGAAGGAAGAAGGATCGTCACAACAGACCGCATAAATGTGCAATCTGTCCGAAATCATTCGCTCAGGCTCAGTCGCTAGCGAATCACATAGAACGTCATAAACGAGTAAAGGAGACACAGAAAAGGTTTCTgtgcgaggtctgcagcaagtgttttgcccaaagcggatctttggtggcgcacatgcgaacgcatacgggcgtcaaaccatacgtttgcaatgtctgcagcagggccttcaccaagagcacttatttgcaactgcatctgcgtactcacagcggagagaagccttatatttgtcagtattgcagtagagcgttcgcccgcgccaacactttggcacggcatataacaatgcatacgggcgaggcgaagtaccattgccaaatttgtacgaaatcgttcagaagattaacctcgttgaatgaacacacgtacacgcatacggggcaaaggccgtatgcctgtaagatttgcacgaaacggtacaacaacgcgggctcactttatgcgcacAGGAAAAAGTGCAAAGCGCAGCAAATGTCGAATACTGGATTTGCGGTTTCGGTGAATAACTCTGTGCAAAACTCGCAACAGGATTCTGTGAATGTTTCACAAGTTTTGATTTATTCGCAAAGGAAGTTGGTGGAGGATGCCACCGTGGGCCAAGTGACGCCCACGCCCCAGTACATGATCCCCAACGTACACAGTCAAAAAAATCCGGGATCGAATATTATCCAGCCGTTTACGGTTGAGGATCCAAACGTTTATACGATTAACTCGAAGCAATTCAAGAACCCCTATTATACGATATATCCCAACATGTAA
- Protein Sequence
- MEEPKTKQFDDAYEKIYGDECRICLKRAAEICELFRNGDTISRKLMAVASVKIEEGDGLPSVICSLCNQRLDASYDFRCQIQNSDTKLREILKLKSSSNNSVSSASIVTAIIADVISSVISSEKENTEKQEVCTTNFYSDNFCFTKEETSFCLTPEKNLFCYEKDSQLNNIEERKSLNNVNVYKSLLDDDSVRQINPMKEEELSSLHDHMVQQDTSLKEDRNEIISDNHQMLDESSRTDGIQDEEEKPLIARTTRLRCTQCIKSFRSKIALQRHAIVHKRKTKLRYVCYVCDKQYSTLAKVKNHVAICHEAHGRKENIEDKRVNYEQSLQDKRINNIQDKRIKLQKTDDSSKEQRRSMKYTCKVCSKQFTYQKSFITHAKSHPEYKSEELDDTSQCSMKERSTEAVEEDDENEEEEDEEDEEDENLPAKSLQCTQCGKLFATKRNLKRHISTHSGLKYTCGTCGKGFSRVDKLKDHEQSKHKSEMFDSSDMDDKDDMDSMSKVDMEGRKKDRHNRPHKCAICPKSFAQAQSLANHIERHKRVKETQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHRKKCKAQQMSNTGFAVSVNNSVQNSQQDSVNVSQVLIYSQRKLVEDATVGQVTPTPQYMIPNVHSQKNPGSNIIQPFTVEDPNVYTINSKQFKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118159;
- 90% Identity
- -
- 80% Identity
- -