Basic Information

Insect: Ceratina calcarata
Gene Symbol: -
Assembly: GCA_026724355.1
Location: JAKKRE010000012.1:8968648-8971458[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.1 1.1e+03 1.0 0.0 3 13 138 148 137 151 0.87

2 16 5.4 6.6e+02 1.7 0.0 6 20 311 325 308 327 0.89

3 16 0.0073 0.89 10.7 2.3 2 23 398 420 397 420 0.96

4 16 0.00046 0.056 14.5 0.2 1 23 426 448 426 448 0.96

5 16 3.1e-06 0.00038 21.3 3.4 1 23 454 476 454 476 0.96

6 16 3.7e-05 0.0045 17.9 3.0 1 23 485 507 485 507 0.97

7 16 0.00053 0.064 14.3 4.6 1 23 513 535 513 535 0.98

8 16 1.7e-06 0.00021 22.1 0.5 1 23 540 562 540 562 0.97

9 16 0.0026 0.32 12.1 3.1 1 23 568 590 568 590 0.97

10 16 1.3e-05 0.0016 19.3 0.6 2 23 610 631 609 631 0.97

11 16 0.00017 0.021 15.8 0.3 2 23 639 661 638 661 0.96

12 16 0.018 2.2 9.5 0.2 1 23 667 689 667 689 0.96

13 16 0.00051 0.062 14.3 2.2 1 23 695 717 695 717 0.99

14 16 5.1e-06 0.00062 20.6 1.8 1 23 723 745 723 745 0.99

15 16 4.1e-07 5e-05 24.1 0.6 1 23 751 773 751 773 0.98

16 16 0.0018 0.22 12.6 0.2 2 23 779 800 778 800 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.1	1.1e+03	1.0	0.0	3	13	138	148	137	151	0.87
2	16	5.4	6.6e+02	1.7	0.0	6	20	311	325	308	327	0.89
3	16	0.0073	0.89	10.7	2.3	2	23	398	420	397	420	0.96
4	16	0.00046	0.056	14.5	0.2	1	23	426	448	426	448	0.96
5	16	3.1e-06	0.00038	21.3	3.4	1	23	454	476	454	476	0.96
6	16	3.7e-05	0.0045	17.9	3.0	1	23	485	507	485	507	0.97
7	16	0.00053	0.064	14.3	4.6	1	23	513	535	513	535	0.98
8	16	1.7e-06	0.00021	22.1	0.5	1	23	540	562	540	562	0.97
9	16	0.0026	0.32	12.1	3.1	1	23	568	590	568	590	0.97
10	16	1.3e-05	0.0016	19.3	0.6	2	23	610	631	609	631	0.97
11	16	0.00017	0.021	15.8	0.3	2	23	639	661	638	661	0.96
12	16	0.018	2.2	9.5	0.2	1	23	667	689	667	689	0.96
13	16	0.00051	0.062	14.3	2.2	1	23	695	717	695	717	0.99
14	16	5.1e-06	0.00062	20.6	1.8	1	23	723	745	723	745	0.99
15	16	4.1e-07	5e-05	24.1	0.6	1	23	751	773	751	773	0.98
16	16	0.0018	0.22	12.6	0.2	2	23	779	800	778	800	0.96

Sequence Information

Coding Sequence: ATGAAGACGGTGTGCGCTGCGAGGATTTGTAAATATTCTTCGGAAATCGAAGATTCGACAGACGTAACATTTATCAACTTCCCGAACGATGACAGCTCGAAGATCTGGGCGCATCATTGCGGTAGGGAAGATCTATTAATGAAATCGAACGAGGAGCTGCATTCAAATTATCACGTATGTTCGCATCACATAGAGGATCGTTATTACGTAAGTAAAACTGACCCAGTGATAATAGACCAGAACGCAATTCCAACTTTGTTCCAATCTAATTCGATCCCTGGGAAGAGAACAAGAAGTGTCTTCGACAGAGACGAACAGATAGAATCAGCTGAGAACGTTGTACTCTCGTACTGCGATATGGACATCGAAATCGATCAGTATCGTGATATCAGTATGAAGTTCTCGGATTTGTGTAGAATCTGTGGAGAATCGAGCTCAGACAGCATAGAAATATTTTCACCTAAGGGAATGAAACTGAAGCTGAAAGAAAAGATCAATCTGCATCTCCCAATCAAGGTTGACATGGAGGATTTAATGCCATTGAAATTATGTCTGAACTGTTACAACAAATTGGAAATCGTTCATTCACTGGTCGTGGCTTCTTTAAAAACAGACATGAGATTGAAAAGATTCATGAACATTAACGAAGAGTTAAACTACGACCACAGATACAGTGGAATAGCTAAAAAGTATTTCATGGAGATAACCGAAGAGATGTGTATGAGAGAAGCCTCTGACGTTACATCAGTACAACTGTCTTCTGACAAAGTCGAAGGGATTATGAGTCAAGAAATCAGCTTTACGAACGATCTCAGGAGAGAAGGGCAGCCCAATTTGAACGAGTTGCTGGAATCGCAAGACGAGGGAAATGAAACGGAAAGTTATCCGGAGAACGAAGCAACGATGTCCAATGAAATTCATCCCATTCGTTGCGATGATACGTTCAAGAGGCGAGAGACGTTCGAAGATCACGAAATATCATTCACGGAGGAAGAGGCGCAGAAGAAAGAGAAGACCGAGAACCGTGCGAGTACGAGAGAATCGAGCGATGTAAAATTTGTTGAACATAAAATTTCTTGTAAACTCCACCAGGACGAACAATATGAGATTTGTAATGTAGCGAGAGACTCGTGTAAGATTTATAAAGATGCGTACGACGCGAATAACATTGTACTAATGGAAACGAATAAAAGGTGTGGCCACTGTGGTTCGCTTTATAGTACCAAAAAAGAATTGTTGAATCATATTTCGAAATACCACGACGGTCGACTCctgttcaaatgcatcgattgcgatcgaagcttcgagaaatggtctagcctggacgtgcacgaagccactcacagagtggacaaaccctacctatgcgatttatgcgggaaaagtttcaaacattcgaacaatctgagaggccataagaggacgcacctagacgattcgcagaagaaacgacacgtttgcgacgtttgcgggaacgcGTTTCGATCTAGATTTCACTTGCGGGAACACATGAACCAGCACGACGGCACTAAGCCTTACTCTTGCGAAAAATGCAGTAAAGCGTTCTGCAAAAGGATACAACTGAGACAGCATAAACTGTCTCACGGTCTGAATCACCACGTCTGTCCGATATGCGGCGCGGCTTTCAATCGCAAGGGGAACATGAACACGCATCTAAAACGACACAACAGTGATGGTACATACGCGTGCAGCGTATGTACGCGCAGATGTAAGTCTATGAGCGAATTGAAGTTACACCGGAAAGAGCACACGCAGCAAGATATAATAGAGAGCATCCGAAGAAAATCCGCGGACAGAATTGTGTGGCAGTGCGAGAGCTGCGAGCGAGTATTTCCAACGCGATCTCTCTTGATGAATCACAAGCGCACGCACGAGGGGAACAGGACGGGTGTCGAGTGCGACGTTTGCGGCAAGAAACTGGGTAGCAAAAGTTCACTGACTTATCACAAAAGGTCCGTACATTCGAAGgaacggccgcacgtctgtcaatactgcggcgagtccgttgtctcgagggaggcgaggctcctccacgaaaggatccacactggagaacgtccctacgtttgcggggtgtgcaatatggagtacaaatgctcgagcaatctgagccaacacatgaagacgcacacgggcgtcaaaccgtacaaatgcgagcgatgcgagaagagtttcactcgcagaggcgcgttacacgtacacgagcgggttcacaccggggtgaaaccgttcgtctgcgggacttgcggtagaagcttttcgcagaagagcgatatgatcaagcatggcagaaCGCATGAAGCGAAATGGTTGCGTTGCGAACGATGCGGCGAGGTCTTCGTTAAGAAGAAAGAGATCCTGAAACATGTCGCTTCACACGAACAGAACGATCCTGTGATGCTGGAGCTGGCACGTGTGGAGGTGTCACGAATACCGGCTTATAACGTTCATTCAATGCCTCGTCGATTTCAATAA
Protein Sequence: MKTVCAARICKYSSEIEDSTDVTFINFPNDDSSKIWAHHCGREDLLMKSNEELHSNYHVCSHHIEDRYYVSKTDPVIIDQNAIPTLFQSNSIPGKRTRSVFDRDEQIESAENVVLSYCDMDIEIDQYRDISMKFSDLCRICGESSSDSIEIFSPKGMKLKLKEKINLHLPIKVDMEDLMPLKLCLNCYNKLEIVHSLVVASLKTDMRLKRFMNINEELNYDHRYSGIAKKYFMEITEEMCMREASDVTSVQLSSDKVEGIMSQEISFTNDLRREGQPNLNELLESQDEGNETESYPENEATMSNEIHPIRCDDTFKRRETFEDHEISFTEEEAQKKEKTENRASTRESSDVKFVEHKISCKLHQDEQYEICNVARDSCKIYKDAYDANNIVLMETNKRCGHCGSLYSTKKELLNHISKYHDGRLLFKCIDCDRSFEKWSSLDVHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSQKKRHVCDVCGNAFRSRFHLREHMNQHDGTKPYSCEKCSKAFCKRIQLRQHKLSHGLNHHVCPICGAAFNRKGNMNTHLKRHNSDGTYACSVCTRRCKSMSELKLHRKEHTQQDIIESIRRKSADRIVWQCESCERVFPTRSLLMNHKRTHEGNRTGVECDVCGKKLGSKSSLTYHKRSVHSKERPHVCQYCGESVVSREARLLHERIHTGERPYVCGVCNMEYKCSSNLSQHMKTHTGVKPYKCERCEKSFTRRGALHVHERVHTGVKPFVCGTCGRSFSQKSDMIKHGRTHEAKWLRCERCGEVFVKKKEILKHVASHEQNDPVMLELARVEVSRIPAYNVHSMPRRFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00303110;
90% Identity: iTF_00303110;
80% Identity: iTF_00303110;