Ccal016589.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000007.1:7116308-7120599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00093 0.11 13.5 1.3 1 23 367 389 367 389 0.95 2 18 0.001 0.13 13.4 0.7 2 23 427 448 426 448 0.98 3 18 0.0024 0.3 12.2 1.1 1 23 559 581 559 581 0.95 4 18 0.001 0.12 13.4 0.4 2 23 585 606 584 606 0.96 5 18 0.079 9.7 7.4 3.6 1 23 674 697 674 697 0.94 6 18 0.0011 0.14 13.3 0.3 1 21 703 723 703 727 0.92 7 18 0.00083 0.1 13.7 3.4 2 23 804 825 803 825 0.95 8 18 9.7e-05 0.012 16.6 4.6 1 23 878 900 878 900 0.97 9 18 0.00028 0.034 15.2 0.7 1 20 905 924 905 926 0.94 10 18 0.015 1.9 9.7 0.6 2 23 937 958 937 958 0.97 11 18 1.3e-05 0.0016 19.4 0.7 2 23 997 1018 996 1018 0.97 12 18 2.6e-05 0.0032 18.4 1.6 1 23 1023 1045 1023 1045 0.95 13 18 0.00014 0.018 16.1 2.9 1 23 1051 1073 1051 1073 0.98 14 18 4.6e-06 0.00056 20.8 0.4 1 23 1089 1111 1089 1111 0.95 15 18 3.7e-07 4.5e-05 24.2 0.6 1 23 1117 1139 1117 1139 0.99 16 18 4e-05 0.0049 17.8 0.2 1 23 1145 1167 1145 1167 0.97 17 18 0.00015 0.018 16.0 4.1 1 23 1173 1195 1173 1195 0.96 18 18 0.011 1.3 10.2 0.4 1 20 1201 1220 1201 1222 0.89
Sequence Information
- Coding Sequence
- ATGGACGGCGTAGAAATAAATACGACCGTTTCGTCACAGAACGAGGGGGCTATCGTATCGACGGTAGAAATATGCCGTGTTTGCCTCCTCGGCAATCTGGTGATGCGTGACTTATTCCTAGAAAACGAGGTCGCGTCCCTTTCTGCAAAGGCGATGAGCTTCGCCAATGTTAAGATGTTACCTGGAGATGGTTTGCCGACACGTGTGTGTTGTATGTGTGCAGATAAACTTGAATCTGCATATGAGTTCAAGCTACAGGTGGAACAAGCTGACACAGTTCTCAGAGAAAGATATGTTACTGTAAATATGAAGGAAGAACTGTTTTTTAATGAAGTTGAAGTACAATTAGAAAGTGAAGAAAGGAATGAGCATGTAGAAGAAATGCATGTGAAAAATGATTACCAGAATGCTGATGAAGCACTTACATCTGTACCTATGTCTCAGGAGGAAAAGTCTCAACTTTTGAAGGAACAACTGGCTTTATTTCAAACAGATCAAGAAGAAGAAATGAGAGAAGAAAATACTGACTCAGTAATCGAGGAAGTAATCGATCAAACAATGACTACTGAACAAGCATCGGAAGCTTGTATGAGCCATGAAGAAGAAGAAGAAGATTGCATGATTGCAGATGTTCCGAAGCATGAGATATTAAAAAACGAGACTAATGATTGTCTTGAAAATATGTCGACTGTGGAACACGATTATATATTGCACACGGAGTGTATGTTGCCCGAAGATCATCACCAGGAACAGGAACAACAACTTGCGTCGGAAGAATCATTTCAGCGAGTAGATTGTTCTGAGGAATCGTTCCAAAGAGTAGATTGTTCCGAGGAATATGCAAATTTGTTGGCGAAAGCAACTGACGTAACGACTCAAGAAATGGAGATCGAAACAAAACAGTTGGTAGTTGCGAACCGTGATTTCAAAGAGATAGATGAGGAGTTTCAATGTCAAAACGAGGCCAGAAGAAGCAAGCGTAAATTAGTTGGACGAAACGAAACGAAACTAGACTCGGTCGAAGAAAATTATTTCGAGAACTTGAACCTGAGCTCGAGACTGAAGAACGTTCAGATTGACCAGTCGGAAAAATGTTTTTTTCTGTGTTATCTATGCGACAAGGAGTTTGTTTCGAAGGGCGTATTAAGGGAGCATATGCACTCTCACGAAGAGGTCCGAAAGGCGTTGTCCTTAACGAAGAAAACGACGTTGGACACGCCAACGCAAAAGAGCATCTGTCCGGCTGCGAAATCACCACCATCGGGTAAACGATCGAACAAGTGCCCCTATTGCGGAAAACAGTATATATACATTATCTCGTATAGTAAACATTTAAAAAAACACGAACGGGAAAAAGAAGGAAGCGATGAACCGATGCCACTGGAAATTTCATTCCAAGAACAAGAATACAGCTTAGACCTCGAGGATTACGAAAACGAACGACGACATTCAAGTTCTGAATGTCGAAAGCGAGCAAAACAAAAAGAAGAAAATACAGAGATCGAGGACGAGGTAGAAGACGAAGAGAAGAGAGATGGTGAGGAAGAGGACGCAGGGAAAGAAAGCGAGGTAAAGAGGGGCGAGAACAACAATGATGACGATAATGATGGCGAAAATGAACAAGAGGATGGTTCGAACAGGGAACACGAGAACAATGGCGTGCGCACGAAGAGGTTCGCATGTGTCAAGTGCTCGGAAAAGTTTTACACGAAGCGTGGGTTACGAAAGCACGAAGCATCGCACGTTGATCTCAGGTGTAGCATATGCGAAGAGGAATTTGATACGTTAGAGAAACTAAGAAATCATAGGGCAAAGCATGTAGTCGAAGGTGTGTTGACCGAGCAAGATCTAGAAATGGGTGCGGAAATATTAGTCAATAAGGAAACAGAGGCTTACGAAACGGAAGATAGAGAAAGGGAAGACAACAATCAAAGAATGGAGAGTGCGGAAATAGATGAATTGTTGCAGAGGACAGAAAATAATTCGACGAAGAAAAAGGACGCACACCGTGGGACCGAGTACAGTTGCAAGATGTGTTGTCAGCGATTTACATCAAAGGATGTATTGCAGAAACACGTGGAACAGCAACATGAACGCACAAAGGTCTATAAGTGTACAGAGTGCAGCAAAGCTTTCGGGAATGAACTTACTTTACGCAATCATCTGATAGCTACGAATCACAAGACTTTCATACACGGTCAGGAGTACGATCCTAATAAACGTATAAAACGTGTCGCCGCGAGGGCTGCGCAAAAGATTATCGATAAAATTACGAGCGATACCGGTTTGGAAGATGACGACGAAGACGAAGGAAATGAAGCTAAAATCGATCGCACTAGTTCTGCGGACGGCAATTACACTCGGAATAAACGGGAAATTTCCTTGCAGAAAAAATATAAAAAGGAATTGGAGTGCGAGAGCTGCAACAAAAAATGTAGTTCGAAACAATCGCTGATGAAGCACATGGAACAACATGTGAAGGACGAGCAATCGGCTAAGCCGGAAAAGTCCAAACAAATGACTGAGAAAAAAGATTGGCACAAAAATTGTGCCAACGACGAGGTCAACGATACTGAGAGGAAGGATGATGATTCGGATTTCGAGAGCGGTCTGGATTGGACGATGGACAATCACGAATGCGAGAAATGTAAAAAACGATACAGCACGAAAAAATCGTTGTTGCGACATCAATTGTTACACGAGGAGCCAAACTTCGAATGCGATATCTGTAACGTCAAGTTCTACCGCAAGGACAAATTGAAAGCTCATTATGATAAGTGTTCGGAAAGAAATCCAGACCAAGTGAGGAAGTGCAATATTTGCGGCGACACTTTCGAGACCAACGAGATTCTACGAAAGCACAGGGCGAAACATGTTACCGAAGGTATTCTTACGGAGGAGGACTTGAGGGATATCGAACCACGACCAGCGGAGAGAAAGCCGGGCGAGAGAGTCGGCAGGAAGAGAAGGACGGATATTGTAGGTTTGGAATGTACCGAATGTAACAAGCGATATACTTCAAGGAAAGGTCTCTTACGGCACATTCAAGTTCACGAGGGGAAGAAATACTTGTGTGATATATGCCCGAAAAAGTTTTACCGGAGAGAACATTTGAAAATACACGTAGCCAAGCATAACATGGTCAAACCTTACAAGTGTACGCGCTGTACAAAACGTTTCATTAAAGAGGAGCAGTTGACGAATCATTTATCGAAACACGATCGGACGTTTAAGAAGACTAAGGAACCTGACAGCTCAAAGAGATTCCTGtgcgagatttgttccaagagtttcacgcaatctacgacattgattgcgcatctcagagcacacaatggcataaaaccgtacgtctgcgaggtctgttcacggccgttcacgacaaacgcttacttgaagatgcacatgagaacgcatacgcaagaacggccgtacatttgTCAGTACTGTTCGCGAGCGTTCGCGAGAGCCGACACGCTTGCCAATCACTTGACCTCGCATACGGGTGAAGCTAAGTATCACTGCAAGTATTGTCCGAAGAACTTCCGTCGTCTCAAATCCTTGAAGGAGCATGTTTTCATTCACACTGGACAGAGACCTTATGCGTGTCCGACCTGTGATCGACGATTCAATAACAACGGAAGTCGATATGCTCATAGTAAGAGGTGCAAGCAAAATTTGGTACAGAATCAAAATCGTGCACAAACATTGGCCACACAAGTGCAACCGGTTCAGAATCAACAAAGAATAACATTGGAACAGGCCACCATCGGGCAAGGACAAATAGTGAAGGCGCAAAATATTAAAACTATCACTATTACCAGGCAAGCGGAACCGGTTACTCATCAAGTGATGCAACATCAAGAAATTTTGATGCCTTTAATACTTCCCCTTACGGTGACTCTTGCTGGTGAAGAAGTTATATTACCGGAAGGAACTAAGATATTTACTACGTCTTAA
- Protein Sequence
- MDGVEINTTVSSQNEGAIVSTVEICRVCLLGNLVMRDLFLENEVASLSAKAMSFANVKMLPGDGLPTRVCCMCADKLESAYEFKLQVEQADTVLRERYVTVNMKEELFFNEVEVQLESEERNEHVEEMHVKNDYQNADEALTSVPMSQEEKSQLLKEQLALFQTDQEEEMREENTDSVIEEVIDQTMTTEQASEACMSHEEEEEDCMIADVPKHEILKNETNDCLENMSTVEHDYILHTECMLPEDHHQEQEQQLASEESFQRVDCSEESFQRVDCSEEYANLLAKATDVTTQEMEIETKQLVVANRDFKEIDEEFQCQNEARRSKRKLVGRNETKLDSVEENYFENLNLSSRLKNVQIDQSEKCFFLCYLCDKEFVSKGVLREHMHSHEEVRKALSLTKKTTLDTPTQKSICPAAKSPPSGKRSNKCPYCGKQYIYIISYSKHLKKHEREKEGSDEPMPLEISFQEQEYSLDLEDYENERRHSSSECRKRAKQKEENTEIEDEVEDEEKRDGEEEDAGKESEVKRGENNNDDDNDGENEQEDGSNREHENNGVRTKRFACVKCSEKFYTKRGLRKHEASHVDLRCSICEEEFDTLEKLRNHRAKHVVEGVLTEQDLEMGAEILVNKETEAYETEDREREDNNQRMESAEIDELLQRTENNSTKKKDAHRGTEYSCKMCCQRFTSKDVLQKHVEQQHERTKVYKCTECSKAFGNELTLRNHLIATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKITSDTGLEDDDEDEGNEAKIDRTSSADGNYTRNKREISLQKKYKKELECESCNKKCSSKQSLMKHMEQHVKDEQSAKPEKSKQMTEKKDWHKNCANDEVNDTERKDDDSDFESGLDWTMDNHECEKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSERNPDQVRKCNICGDTFETNEILRKHRAKHVTEGILTEEDLRDIEPRPAERKPGERVGRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKTKEPDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLVQNQNRAQTLATQVQPVQNQQRITLEQATIGQGQIVKAQNIKTITITRQAEPVTHQVMQHQEILMPLILPLTVTLAGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -