Ccal005718.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceratina calcarata
Gene Symbol
-
Assembly
GCA_026724355.1
Location
JAKKRE010000004.1:10054575-10056959[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 8.2e-06 0.001 20.0 3.3 2 23 282 303 281 303 0.97
2 15 0.00014 0.017 16.1 4.2 1 23 309 332 309 332 0.97
3 15 1.8e-06 0.00022 22.0 2.2 2 23 395 416 394 416 0.97
4 15 9.7e-06 0.0012 19.8 1.9 1 23 422 444 422 444 0.97
5 15 0.00044 0.053 14.6 0.3 1 23 450 472 450 472 0.97
6 15 1.7e-07 2.1e-05 25.3 0.8 1 23 487 509 487 509 0.99
7 15 1.5e-06 0.00019 22.3 0.6 1 23 515 537 515 537 0.98
8 15 7.7e-06 0.00094 20.1 1.8 1 23 543 565 543 565 0.98
9 15 0.00069 0.084 13.9 0.2 1 23 571 593 571 593 0.99
10 15 3.1e-06 0.00037 21.3 0.3 1 23 599 622 599 622 0.94
11 15 1.6e-05 0.0019 19.1 1.3 1 23 628 650 628 650 0.98
12 15 0.00034 0.042 14.9 4.7 1 23 656 678 656 678 0.98
13 15 5.1e-06 0.00062 20.6 0.2 1 23 684 707 684 707 0.96
14 15 3.4e-06 0.00042 21.2 0.6 1 23 713 735 713 735 0.96
15 15 3e-06 0.00037 21.3 4.5 1 23 741 763 741 763 0.99

Sequence Information

Coding Sequence
ATGAATTCACTTTGCAATACAGCAGCCAGAAAGTTGCATTACAGGGGACAAGTTGATGTAATAGATATGCCGATAAAATTAGCTTGTGATTACAAGTATTTTCTCGTGTACGAGGACCAAGTATCGAGATTCATTGTATTGGAAGGTCTGCGTGAAAACACAGCGAACGAAGTAGCCGAGAGACTTCTAGAGGCATTGGCTATTATCGGAGCACCACAAGTCTTGCAGAGCAGAAATGGACGTAAATTTGCGGAAGAAGTCGTGCGTGAATTACGTCTATTGTGGAAAGATTTCATAATACTGCACGGAGATATGAGTGAAATTACTGAACAGGACAGAGACTTTAAGAACTTGGTTGAATCGTGGGTAGAGGAGAATCCAACAAAATCGTGGAAGCAAGCTTTAAAATATGTACAGATCCTCCAGAATACAACGTTTTGCTGTGCAGATGGAAAGGTACCTTATGACGCGGTGTTTGGAAGGAATGTACATGAAGAGTTTAAAAAACGAATGGTAGTTTCGAGAGAAACTATATGGACAGAGGAAGAATGGATTAATCTTTGCCTTAATCAAAAGAATAATATTAAGGCAGAAGATAATCAGCAGCCTGTCGAAAACTCAGTTTTTACAAACATCAAATACGAAGATAGTTTAAATGACTCTGAGAGCGAAGACTCTTCGGATTTAACTCGCGAAGATAGCGACAAGGTGCAAATGGATGCTCCCGAATTTAATTTCGTGAACGTGAAAAGTGAACCCATAAACGCGCACACGGAAGATTCATTATACGAAGATGAATCCGGTACGGACGATAAAACACTAGAAGAGAACCAATCGGATTTGAAATGCAAAGTTTGCCAGAAACAATACATGAGGCCTGGTCATTTGAAAAACCATATGAAGACGCATAGAAAAAGGAAAACGTTCGAATGTAAACTGTGTAACAAAACGTTTCACGTCCAAAGTTTATACGAGAAGCACTTGCGGCAGTATCACGGACAAAATAAGTTATCCACATTGACCAGAAGCAGAAGAAGCAAAGAACCGGCGTTGGACACGAGAGCGTCTAAATTAAGATGTTCCTCGGATTCGAATCTCGATGAAACGAATGAATCTCGAAAGGAAAGGAGAAAACTGATAACGAATAATAGAACGATGAAAGTAAATGGAGAGTCCGCTCTGAAATGTTCATATTGCAATCAGAAGTTCAGCTTCCCTAGCGTATTGAAgagacacatgcgatcgcacactaacgagagaccctacatttgcgacgtctgcaataaaagtttcaaacagttgggccaccttagtcagcattcgttgacgcacaaggattatcggtctttccattgcgccgtttgcggGATAAAGTTCGAATCTTTAGGGTCGTTAAAGATCCACGCTCAGTCGCACAAGGAGGGTTACGTCTCGAACACTAAAGACGCGTTCcgtctgtacgaatgtgataattgcaaaaaagtgttcacgactaagagcgtgttggagcggcatatattaacccactctcacgaacgacagttcccgtgcttgatctgcgggaaaaggtttaagcaagcgggacatgtaaaatctcacatgctggtgcacactggcgaacgtaagttcgaatgctcggtctgccagaagagattcagcctctcgaattcattgaagaagcacatgtacgtgcacaacggggagaaaccgtaccagtgcgacgtgtgcggcgctcggtttcttgagaagaggaatcttaacgggcatctgatgactcacacgaacgagcgcccgttccggtgcaagatctgcgggaaacgctacacgttggcggacacgttgcgccggcacataagcgcagcgcacgaagacggccgcacgtatcaatgcgagatatgcgcaaagatgtttaaacagctcgctcacctgtccgttcacaagaaggtgcacaacgacgagcggccgttccagtgccacttgtgcgaaaagaactttaagcacaagaacgtgctcaagtctcatctggccattcacgcgaacgttcgaccgttcgaatgcgacgtgtgcaaggccacgttcgtgaggaagacgaacttgcagacgcacatcgcatcggctcacatgaacgagaggccgtacgtctgcacgatctgcgggaaacgattcaaacagatcagtcacttgaacggtcacgtggtggtgcacagtaatctgatgccttatcaatgcgatttctgtGATCGGCGATGTAACAGGCTCGATAATCTGAAGAAACATATGCGTCTTCATAAAAAGAACCAAGAACAGACGGTGTAA
Protein Sequence
MNSLCNTAARKLHYRGQVDVIDMPIKLACDYKYFLVYEDQVSRFIVLEGLRENTANEVAERLLEALAIIGAPQVLQSRNGRKFAEEVVRELRLLWKDFIILHGDMSEITEQDRDFKNLVESWVEENPTKSWKQALKYVQILQNTTFCCADGKVPYDAVFGRNVHEEFKKRMVVSRETIWTEEEWINLCLNQKNNIKAEDNQQPVENSVFTNIKYEDSLNDSESEDSSDLTREDSDKVQMDAPEFNFVNVKSEPINAHTEDSLYEDESGTDDKTLEENQSDLKCKVCQKQYMRPGHLKNHMKTHRKRKTFECKLCNKTFHVQSLYEKHLRQYHGQNKLSTLTRSRRSKEPALDTRASKLRCSSDSNLDETNESRKERRKLITNNRTMKVNGESALKCSYCNQKFSFPSVLKRHMRSHTNERPYICDVCNKSFKQLGHLSQHSLTHKDYRSFHCAVCGIKFESLGSLKIHAQSHKEGYVSNTKDAFRLYECDNCKKVFTTKSVLERHILTHSHERQFPCLICGKRFKQAGHVKSHMLVHTGERKFECSVCQKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHKKNQEQTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-