Ccal015312.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000025.1:301629-301943[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2 4.5e+03 -2.0 0.0 33 40 31 39 28 44 0.57 2 2 4e-10 8.2e-07 29.2 0.0 1 37 51 86 51 91 0.90
Sequence Information
- Coding Sequence
- ATGAGGGTGAAAAAGAAAGAAAGAAAAGATAAGAATGTCAGGGAAAGACAAAGAAAACCAAAATGCAATGTTAAAGTTGTTAACAATGTGTTGAGCACGAATTATGTGAATGGAAAAATTGTTCAACAAAAAATCAAAAGGAAATGTTATACACCAGAAGCAGTGAAAGAGGCCGTGAGAGTTGTTCATGATGGTGCGTCACTGAGAAAGGCAGGCGAAATGTACGGCGTGCCTTACGCTACCCTGAGCAGGAAATTAAAAAATCCTGAAGCTATTTACAAAAAAAGGTGGACCTCCCACAGTTTTAACTACTGA
- Protein Sequence
- MRVKKKERKDKNVRERQRKPKCNVKVVNNVLSTNYVNGKIVQQKIKRKCYTPEAVKEAVRVVHDGASLRKAGEMYGVPYATLSRKLKNPEAIYKKRWTSHSFNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -