Ccal018615.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- -
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000005.1:7384262-7389330[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 3.3e+03 -1.5 0.0 28 43 59 74 59 74 0.87 2 2 9e-11 1.9e-07 31.3 0.0 3 38 334 368 332 374 0.91
Sequence Information
- Coding Sequence
- atgatcgcgcaatatgtaggtacccagcagcgacgatgggatgcccatgtggcggagttcgtgttcgcatacaatacatccatatcgggaaccacggggtataccccggcatttctaaactacggacgcgagctccttgccccgggcaatagcagcggctacaaaccgaccgcagttccagcgaccacccgacttaaaaggctacgcgaggcctacgaacttgtccatctcaaccaggcgagcgccgtccaacgccaggcccggtattatgatgcgcaacaccgagactgggaaccaaacattggggacgaggtcctcagccgaacacacaccttgtccagcaaaatcgaaggccgtaatgcgaagctcgagccgaagttcgacgggccataccgaatccactgtaaacacgcgcccggtgtttacgatctgcgcggcgacaacggggtatttgtaaaaaatgtacacatccacgaccttaagcgctactggccgcgggctaacgctaacaccGCTCATTACAGTCGCGAAAATGGATCCGACAGCACGAGTGAATCCACGGTTAAGGAAACCAATCGTGCCGACAGCCCGGCCCGCGAGATCCGAGCTAGCCGGCCAGCCGCGGGTCACGACCCCAGCGTGCCCTCCACCGCCGCAGCCGCACGGACCTCGTGCCATCCGCCGCCCCGACGCCGAAGTAATTATTATCGAGGCCATGCACCAACGACCGGCTCAAACACCGCGACGGGCACCCCGGACACCCAGCGCGCCCAAGAAGAGCGACCGGCCGACCCGGATGGTGGCCCTACCGGACGGCGGAGAGGTCGCCGTCCCCGTGGGGGTGCGAACGTGGCGCGTCCGCCGACACGGGCAAATCCGGACCCTCCGGTTCGACCGGACCGGCCAACTAACATACGCCAGCCCGTGGCACGATCTACCACAAAGAAAAAAGTACTTAAGAATCAGAAAGAAAAAGATAAAAGGAAACAGTATTCTTCTGATGATGTCCAAAAGGCTCTCGATGCAGTGAACAAGGGTCTATCTTACAGAGAAGCTGCAAAGAAATTTGGAGTTCCAGCAACTTCTATTCACAGGGCATTACAACATCCTGAAAAATTAAATTCAAGGCATGGTCCGGCTCCAATTTTATCTACAGAAGTAAGAAGAAAATTATTCACTGGATACTATATCGAGCAGAAGAGATGA
- Protein Sequence
- MIAQYVGTQQRRWDAHVAEFVFAYNTSISGTTGYTPAFLNYGRELLAPGNSSGYKPTAVPATTRLKRLREAYELVHLNQASAVQRQARYYDAQHRDWEPNIGDEVLSRTHTLSSKIEGRNAKLEPKFDGPYRIHCKHAPGVYDLRGDNGVFVKNVHIHDLKRYWPRANANTAHYSRENGSDSTSESTVKETNRADSPAREIRASRPAAGHDPSVPSTAAAARTSCHPPPRRRSNYYRGHAPTTGSNTATGTPDTQRAQEERPADPDGGPTGRRRGRRPRGGANVARPPTRANPDPPVRPDRPTNIRQPVARSTTKKKVLKNQKEKDKRKQYSSDDVQKALDAVNKGLSYREAAKKFGVPATSIHRALQHPEKLNSRHGPAPILSTEVRRKLFTGYYIEQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -