Ccal005526.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- lov
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000004.1:7928775-7930074[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-18 2.4e-15 56.5 0.0 1 44 221 264 221 265 0.96
Sequence Information
- Coding Sequence
- ATGAAGAGGTCCGTCTCGCCGACGGTTGGAGTCGATCAGCAAGTGAAAGCAGAGAGCAGCGAAGCGGCGAGTAGTCCTCGAGGATCGCCACTGACCGGGACCAGTCTGCTGCACCCGGACGGTTCCTTGCAGGACATTCCCGCAGCCGCGGCAGTGGCCGGATTGCCAACGATGTCTGCGTTGTCGTTGACGCCACCACACCACCACAGCGAGGACAATTACCGCCTGCCTCAGGGTCATCACCCGAGGGACGGAAGCCCTCATGGTCCGAACAGGCCGCATCCGTATCAACAACAGCAACAGCATCAACAGCACCACCAAGAATCGTCGCTGACGTCTAGAAGAACTTCGATGACGGCGGGCATGTTTCCTCTGGACGGCGGCGTAGCTACTTTGGGAGGCGGCCTGTTTCCTCACGCGGGCGCCTTGGACAGAGGTTCCCTTCTGGCGGATCTGCACGACAGTTTCAAACCGGAAGCGCTTCACGGGTTGTTCGGCGCGGCAGGCCTGGGTTCCCATCATCCCACGAAGAAGCCGAAGAAGCACAGAGGCGACGGAGACGCGGCCAGAAGATGGGCAGATCAGAGTAGTCGAGGATTGCCCGTTGGAAGGCCGAAGGGTCAACACAGTGCGCCCAGAGGCGGCCCACCGAGATCGTGGACGAACGCCGAACTCACCGAAGCGTTGCAGCACGTCTGGAACAAGAAGATGACTACGTCGCAGGCCAGCAGGATATTCGGTATCCCGTACAACAGCCTGTTGATGTACGTTCGCGGCAAATACGGGAAGAGCTTGAAGCTTGAACAGCTGAGAAGGGATTGCACGGGAGCCACGACCGGGGAAGTGGTCTTGAACTCACTGAACAACAACGTGAAACCCGTCCAGCCTCCCACTCAATTGAGTCACCCTCTCGCAGGGCTGCCGCCCCATCCCAGCGACGAAGGCGGTTTCCCACATCACTCGTTGCTCGGCGGCAACCTTCCGCAAAGCTTTTTTCCCGATTTCGCCGCGGCTGCATTCCCCGTCCCGGTCAGTATGGTCCATCTGCTGCCACCCAGCGAGCAGAAAGCTTATGAACCGGCCGCGAATCCCACGGGGGCCGGTGCAGGCCCAGGGGAATTGTCCGGAATGAGGAGCAGCAGCAGGACGCCATCGCCTGTGGACCATCGTCATCACCACGAGTCGATGCAACCGCAGCCGGCGCAATCCGCGCCCGCGCTACTCCAACAGAACGGCTCGGATTAG
- Protein Sequence
- MKRSVSPTVGVDQQVKAESSEAASSPRGSPLTGTSLLHPDGSLQDIPAAAAVAGLPTMSALSLTPPHHHSEDNYRLPQGHHPRDGSPHGPNRPHPYQQQQQHQQHHQESSLTSRRTSMTAGMFPLDGGVATLGGGLFPHAGALDRGSLLADLHDSFKPEALHGLFGAAGLGSHHPTKKPKKHRGDGDAARRWADQSSRGLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVVLNSLNNNVKPVQPPTQLSHPLAGLPPHPSDEGGFPHHSLLGGNLPQSFFPDFAAAAFPVPVSMVHLLPPSEQKAYEPAANPTGAGAGPGELSGMRSSSRTPSPVDHRHHHESMQPQPAQSAPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -