Crub039001.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424550.1:3415967-3436076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1.6 10.6 1.8 2 21 75 94 75 95 0.94 2 12 0.0064 0.8 11.6 4.8 2 23 158 179 157 179 0.95 3 12 0.36 45 6.1 0.7 1 23 191 215 191 215 0.91 4 12 6.1e-05 0.0076 18.0 0.3 2 23 222 245 221 245 0.97 5 12 0.068 8.4 8.4 0.3 1 23 251 273 251 273 0.93 6 12 0.0016 0.2 13.5 2.9 1 23 279 301 279 301 0.98 7 12 0.2 25 6.9 0.3 1 20 311 330 311 332 0.92 8 12 0.011 1.4 10.8 0.1 1 23 411 433 411 433 0.97 9 12 0.97 1.2e+02 4.8 7.2 1 23 440 462 440 462 0.95 10 12 0.00065 0.081 14.7 1.8 1 23 505 528 505 528 0.95 11 12 0.00039 0.049 15.4 0.6 1 23 535 558 535 558 0.97 12 12 0.0071 0.89 11.5 0.2 2 23 580 602 579 602 0.96
Sequence Information
- Coding Sequence
- ATGGACTTAGTCAGAGCCGCCGAGAATCCACAAAACACAACAATGCGCACGGAGCCACCCATCATAAAAACAGAGGTAAAGCAAGAATGCGTGGACAGCAGTGAGGATGAAATCTGGATCGTTCAGACTGGCGATGTTGGAGACACTCAAGAGCTGCAGAACCTACTGTGTAGTGCCAAGGTCAAAGAAGACGGGCAGGACGGTGAATCTGAGAAGACACCCAAATGTTTTAATTGCagTCAAGTGTTCACGACCGCAGATGGCCTGTCGAACCACCGCTGTAGACGACGGAACCGGAAACGGAAGTCCAAAGACCTGGTCAACCTCATATGTATACCCACTGAGGAGGACTTTTTGAAGAGAGCTCAGGGGCGCCCTCGGCCTCCCGATACAACGATAGACAACGATCTCCTTGTTATGCTTCCCCGAAAACGTCGTAACCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGTCACAACTGTAACAAATCCTTCACGTCCAAAGTTAGACTCAAGTTTCATATGCAGTTCCACGAAACATCAAACCCACCCCGAGCAGACGGACGCTACTCCTGCTCCGAGTGTGACGACGCCACCTTCGCTACGGAGACGGAACTCTTCGACCACGTGCACTTCCAGCATGACAAGCAGAAGAGGTGGCAGTGTCCTGTCGAGGGCTGCGGGAAGACTTTCTTCCTGAGGGCCACCCTTACGAAACACAGTCGCACGCACACGGACACGCGACGATACGTGTGCGTCACGTGCGACAAGCGGTTCTTAGACAAACAGACCTTGGATGAGCATGGAGTCACGCATTTACAGATCAAACCCTTCCAATGCCACATCTGCCTGAAGCAGCTGACGCGTCGCTCGCGCCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGGCGCCGCGCCTGGTGTTCGTGTGTGCCGTCTGCGCGAGGGCCTTCAGAGACCATCGCCATGCACAGGAGCACGCGAGCAAATCGACGGAATGCATCGAAGCATTTGCTAACGAGTTGAAAGAGGAGGCGGAAGAGGTATCCGTACAGTTGTCTCCCACCAGTGGCCTTGTGAGACACGCCGTACAAGTTGTCGAATCCCCAAAACTATCAAAGCCGATAAAACGGCAAGTATCAGCAGAGGTGGCCGCTCCATTGCTGTCTCAGTTGGCAGACGAAGCGCGCGCTCTCATCCGAGTGGTCGAGATTGAGAAGGCGTTCCGATGCGAGTATTGTGAAGTTGTGTTCTACCTGGAAGGCCGTCTGAACGCTCACCGCGCGATACACAAGGGCGTCAAGAATCCCTTCACCTGCCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGCACAACCCACAAAACGACCCACGGCTTCTACAAGCGCTCGCTAGCCGACGCGAAGAAGCAAGCTGACGGGCACGCACAGTCCGACGCCGACTCGGCTCGCTCCGCGACCGGCATACTGGGATACGGCGACTTTCCTGTCGTCAAGCACTTCCTGTGCGAGGACTGCGGCCGCTCATACCTACACTGGACGTACCTACAAGTACACAGACGCATGAAACACGCGAATGAAAACTTTCTCTACAACTGTAACCAGTGCGAGCTTACCTTTCCCAACAGTTGGAGCCTGGCGTATCATCGTAAGAAGGTTCACGGGAAGACAGGTGCCGACGACCCTGGAACCGCCAACAAGAATAACAGGGATGATTATAGGATACCATGTCGGGATTGTAGCGAGGTGCTGCCGAACAAAACAGCCTTGTACAAGCATCGGAAGAAAGAACACAGCGATGGGGCTACTCGGGGATATACCAAACCAGGTAGGAATATTCAATAcactttcataaatatttaa
- Protein Sequence
- MDLVRAAENPQNTTMRTEPPIIKTEVKQECVDSSEDEIWIVQTGDVGDTQELQNLLCSAKVKEDGQDGESEKTPKCFNCSQVFTTADGLSNHRCRRRNRKRKSKDLVNLICIPTEEDFLKRAQGRPRPPDTTIDNDLLVMLPRKRRNREPTSNPQVVTCHNCNKSFTSKVRLKFHMQFHETSNPPRADGRYSCSECDDATFATETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVFVCAVCARAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHAVQVVESPKLSKPIKRQVSAEVAAPLLSQLADEARALIRVVEIEKAFRCEYCEVVFYLEGRLNAHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGHAQSDADSARSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYNCNQCELTFPNSWSLAYHRKKVHGKTGADDPGTANKNNRDDYRIPCRDCSEVLPNKTALYKHRKKEHSDGATRGYTKPGRNIQYTFINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -