Crub042043.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424553.1:7272572-7281314[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.33 41 6.2 0.3 1 23 71 94 71 94 0.89 2 16 0.24 30 6.7 0.0 2 23 254 276 253 276 0.95 3 16 0.0046 0.57 12.1 1.5 2 23 299 320 298 320 0.96 4 16 9.3e-05 0.012 17.4 5.0 1 23 324 346 324 346 0.98 5 16 0.049 6.1 8.8 0.3 1 23 351 374 351 374 0.97 6 16 1.6 2e+02 4.1 0.3 2 20 382 400 382 404 0.79 7 16 0.00012 0.015 17.1 2.7 1 23 411 434 411 434 0.95 8 16 1.2e-05 0.0014 20.3 3.2 1 23 440 462 440 462 0.97 9 16 0.53 66 5.6 0.3 1 13 468 480 468 482 0.89 10 16 0.058 7.2 8.6 0.4 1 23 517 543 517 543 0.88 11 16 0.0069 0.86 11.5 0.6 2 23 615 636 614 636 0.96 12 16 0.74 92 5.1 0.7 1 23 640 662 640 662 0.92 13 16 0.025 3.1 9.8 2.8 1 23 667 690 667 690 0.90 14 16 0.0018 0.23 13.3 1.2 2 23 727 749 726 749 0.96 15 16 1e-05 0.0013 20.4 2.0 1 23 755 777 755 777 0.98 16 16 0.00087 0.11 14.3 3.0 1 23 783 805 783 805 0.98
Sequence Information
- Coding Sequence
- ATGGAGACTAAGATCGAAGAAATGGAAGAACCTGTGAACGCAGACCAAATCAGGACCCGATACAAGGCTATAGTCAACGACAAATTCAAGAAGGAGAACAAAGAATCTGAAAAATTCGAAGTCAACgaaatgaataaacataaagACAATATAAGGACTATATTACAAAACTCGAACGCGACAGTCATCAAAGGATTCTGGGGAACCGGTTATTCTTGTAACTTTTGTGACGAACAGAGAGTAATTCCTTCAGAATTGAAGCAGCATAACTTGGAAACCCATAGTAATGTTGGAGACGATGCTATCAAAGTAAAATACGTATCAGATTTAGTTTTAAGACTTGATATTACAGATCTCAAATGCAAGCTTTGCAACGCCAATGCCCAACGGAATATAAAGGCCACAGAGAATGAAAATGCCAAAGAAAAAAGCAACGTACAGACTACCAAAGCCCCGAAGATTATATTCACTACACAGGCCGAAGATGACTGTAACAAAGATAAGAACAGCATACAGAAAAACAAGAATCTTGTGGCAAATTTCAAAGCGACCGTTCGTTCTATCTTAAAATTCACGAACGCCACACCGGTCAAAGGTTACTGGGGCATCGGATATGCTTGCGTGTTCTGCAATTACCAAAACGCTGCAACTTCTGAACTAAAACACCACACATTAACAACACATTCCAAAAATGAAGACGAACTTCCGAACTTGACATATGTCTCGGATATGATCATTAAGCTAGATATCACAGGGCTCAAATGCGAGATTTGTGGCATTAAAATAGACTCTCTTATCGAAATTATGAATCATATCAAGATAATTCATAGACAACCTATGTATTTAGACATCTCAAATCATATCGTTCCTTTTAACTTCGAAAAGGAGGCTTTAACTTGCGCTCTTTGCCCCACACAGTTTACTTATTTCAAGCATTTATCCGAGCACATGAATGagcatttcccaaactattctTGCAAAGAATGCAATAGATGCTTCATCAACCAGCGTTCTTTAAGAACGCACTCAATGAGGCATTTAACAGGGACGTTCGTGTGCGCATTTTGCGCCAAAATCTTCGACACCCGAATCAAAATGAGAGAACACGAAAGAGTTTTACACCTAAAAGGTTCTAAGACACGCAAATGTGGGTACTGTGAAGAAAAATTCATAGATCCTGTGAGAAAAACTGAGCATGAAGTAAAAGAACACGGTGCTCCTGTTCGTAAATACCCTTGCAAAGAATGCGGGAAGTGTTTCGATAGTCAACGTGCTGTCAAAAGCCATACGAATCAATTTCACTTGCAGCTAAGGCCGCACAAATGCTCAGAATGCGGCAAAGGCTTCTATAATAAAAATGAGATGAAACGACATATGGTAAAGCATACGAAAATCAAGGAGTTTCAATGCTCTATCTGTTCGAAATTCTACGTTTCTAGAGCCGCAGAACAAAGCTCCAACCGTGAGAAGATGTACCTACTATTAAAAGAAATCAAAGCGATCCTAACATTCACAAACGCTACTCCATACAAATCCAAAAACGTCCGGTACTACTGCGCATACTGTTCCACCGACGGACCTCACTTCGAGGACCCTGACGACCTCCGGACACATACACGGACAGAACACGTAGGACACCGGACAGAGAAGATCGAATACGCCATGCGTCCTTACTGGATGAACGAGGTAATCAAACTGGATATAGAAAACCTTCTCTGTACTGTTTGTTGCGTTGTTATTAACAATTGGAACGAAATGTTCAAACATTTGAGGGAAAAACATAATGTAGTGTTGGATCAAGCTTATACAAGAGCTATTCCGTACGTTTTAAAGAATGATTTGCAATGCGCGCTATGCAAAGAATCTTTTTCAAACTATCTGCATTTAGACGGGCATATGAATGCTCACTATAACAACTATGTTTGCGATGACTGTGGGGACACGTTTCTCGCACACAATCGACTAAAACAACATGTAAAAATTCACAACATAGGTAAATACGAATGCAGTTTTTGCGACAAAGTCTTTTCCTTACACAAATACAGAAGGAAACATGAAGAATTAGTCCACAAGCAAGTCTCTAAGTTTAAGTGTCTATACTGCTCTGAAAGATTTACTGGGGAGTACTTAAGACACCTACATTGTCTTCAGCACCATGCGGAAAAAGTCAAAACTATAACTTGCGAATTTTGCGGGGAAACGTTCACATGGAAGCAATACTATACGAACCATATTCGCAAGAAGCATCAGAACAAAAAGCCTTACGAATGTAGCAAATGCAACAAAAAGTTTTACGGCAATTATGAACTTAAAGAGCATATGTTAAGACATTTGGGGACTAAGAATTATGAGTGCATGATTTGTCATAAGAAGTATGTTACTTTGAATTCGGTAAAGCAGCATATGAAACAGCATAAAAAGAAGGATGAGGCTTGA
- Protein Sequence
- METKIEEMEEPVNADQIRTRYKAIVNDKFKKENKESEKFEVNEMNKHKDNIRTILQNSNATVIKGFWGTGYSCNFCDEQRVIPSELKQHNLETHSNVGDDAIKVKYVSDLVLRLDITDLKCKLCNANAQRNIKATENENAKEKSNVQTTKAPKIIFTTQAEDDCNKDKNSIQKNKNLVANFKATVRSILKFTNATPVKGYWGIGYACVFCNYQNAATSELKHHTLTTHSKNEDELPNLTYVSDMIIKLDITGLKCEICGIKIDSLIEIMNHIKIIHRQPMYLDISNHIVPFNFEKEALTCALCPTQFTYFKHLSEHMNEHFPNYSCKECNRCFINQRSLRTHSMRHLTGTFVCAFCAKIFDTRIKMREHERVLHLKGSKTRKCGYCEEKFIDPVRKTEHEVKEHGAPVRKYPCKECGKCFDSQRAVKSHTNQFHLQLRPHKCSECGKGFYNKNEMKRHMVKHTKIKEFQCSICSKFYVSRAAEQSSNREKMYLLLKEIKAILTFTNATPYKSKNVRYYCAYCSTDGPHFEDPDDLRTHTRTEHVGHRTEKIEYAMRPYWMNEVIKLDIENLLCTVCCVVINNWNEMFKHLREKHNVVLDQAYTRAIPYVLKNDLQCALCKESFSNYLHLDGHMNAHYNNYVCDDCGDTFLAHNRLKQHVKIHNIGKYECSFCDKVFSLHKYRRKHEELVHKQVSKFKCLYCSERFTGEYLRHLHCLQHHAEKVKTITCEFCGETFTWKQYYTNHIRKKHQNKKPYECSKCNKKFYGNYELKEHMLRHLGTKNYECMICHKKYVTLNSVKQHMKQHKKKDEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -