Crub037284.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424548.1:2881994-2930642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 1.5e+02 4.4 0.2 1 23 501 523 501 523 0.95 2 11 0.0002 0.025 16.4 0.3 1 23 534 556 534 556 0.97 3 11 0.00073 0.091 14.6 1.9 1 23 562 584 562 584 0.97 4 11 1.9e-05 0.0024 19.5 2.6 1 23 591 613 591 613 0.99 5 11 1.3e-05 0.0016 20.1 1.3 1 23 619 641 619 641 0.93 6 11 6.4e-08 8e-06 27.3 0.1 1 23 647 669 647 669 0.99 7 11 5.9e-06 0.00073 21.2 1.9 1 23 675 698 675 698 0.96 8 11 0.00012 0.014 17.1 2.6 1 23 704 727 704 727 0.96 9 11 5.6e-05 0.0069 18.1 2.7 2 23 734 755 733 755 0.97 10 11 1.3e-05 0.0016 20.1 1.5 1 23 761 783 761 783 0.97 11 11 0.033 4 9.4 0.1 1 23 789 813 789 813 0.93
Sequence Information
- Coding Sequence
- ATGAACCAGTGTTGCTTCATATGTAACAACAGGGCTGGCCTCTCACTTAGAAATGCTTCAAGCCTGTTTGGAGAACAAaATACATTACAGTCAGGCAAGAAAGTATCAGAGGTGGTGAGTGAGATCGTAGGCAAACCGGTGCTAGAAAATAAAGTACATACCAGTATATTATGTAGGAAATGCTACAAAACATGTTCCGAGTATGATACCATACAAGTTAGattacaaacaataaaaacggAACTACTAGAACAATTCAAACAATCATTACCTGACCATAATTTAGACTATGATAATTATGAGAAGAATGTTTGTTCACCGCCAATACCTAAACCTTTACTGGGGAAGAAGTTGGTGTTGCCAGCATCAAAATTACAACCAATACCACCGGATTTATTGCTCAAAGTGGGGAAATTTGCATCATTTTCCAAATCTAATGTGATTTTGCCACAAATCAAGCCAATCACAGCCTCGACATTAAACCTAAAAGTAACCGTCGGATCATCAGTCCTAACACAAACGATAAAAACTTCAACCAGTAAACCAATAGAAAAACCCGCATTAGACTCAAATTCGATCCTCACTTCACTGGCAAATGCTTTGAAAGATGACCTAGATAGTTTGGTAACGACGCAAAGTAATATGAACTCTATGAGCCAGAAGAATTCGATTTTGAGTTTCAATGTAAACTCTTTGCCTAAAGATTTTCTCTCTGGGGCTATTTTGAGGAAATTGGATGGAAATAATGATGAGTATGAAAAGGGGGAGGAGACTAATGAGGATCATCCTATGGAAATTGATGAAGatTGTTTGTCTGTGGTTCCTGTGACGTCAGCCGATGGAGACATGGTGCTACAAGTTGAAGGACTACAGTCAAAATCCGATACTACGCCAGAGGTCAGTGAATACCTAAACCTGCCTTCATTGGATGGCGCTGATGAAGTGACTGACGCGCCGAAGTATATCCTCGGCAAGCTGGAGATACTCAACGAGGGTGATGAAGAGGATGatgaggctgatgatgatgatgatgacgaaggaCACACAATAGTCGTGGACAGTGAGAATGGCTCAATACTCCGCATGGTAACCGGTCAGAAGTTCATCTACGAGGGCGGAGAGATTTCACTGGTGatgcctgatgatgatgatcagcagGACGGTGATGGTGATCAACAGGATAATGGTGATAGTCAAGATTCCAATGATGAATCGCAGATCGAGTTACAAGTCTCGGGTGACGAGGAAACTGCGAACGCTATCATAGCAGCCGCTCAGGAACAAGGAGGTGCCTTCATAAAAGTAGAATCAGGCGAGATGTACCGCGTGAAGTCAGTGTCCAGCGCGAGCGCGGACCGAGCGGACGCGCTGCTGCAGATCGTCGCGCAGGACGGGGACATGTTCAAGTGTCTGCTGTGCAAGAAGAATGATGAAAATACACCGCTTGAAGATGCGGATACGATGATGCGTCACTTGAAATCGCAGCACGACGCGAGGATATATCTGTGTCGCTTCTGTGGTGCCGTCATGAGGAAACGCACGGAATATGCCACGCATATAGCCTCGCACGCCTCCCCCGCCCCGGCCGCCCGCGGCGCGCACCGCTGCGCTGTGTGCGGGCGCAGCTACAGCTCGCGCACGCTGCTGGCGGAGCACGCCAACGTGCACTCGGGCGCGCGCCCGCACGTGTGCGCCGTGTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCACATCTCAAGACTCATGCGgtTCGGCCGCGCCCTTTCAAATGCACTCAATGTGGCAAGTCGTTCCTCACACAACAAAATCTGAATCAGCATGAGAAAACACACTCGGGGGTCAAGGAGTTCGTCTGTAATATATGCAacaAAGCCTTCAGCACACATCACAACTTAGAAGTCCACGGTGTGGTTCACTCTGGGAACAAGGCGTATGTGTGCAGTGTGTGCGGGAAGGCGTTCGCAAGGAGAGCTGAGCTGAGGGACCACATGCGGATACACACCGGAGAGCGTCCATTCTCGTGTGACATCTGCGGCGCTCGCTTCACGCAGCGCTCCAACTTGCACTCACATCGACGCGCGACACACTTCGACGACAAGCGGTATCACTGTGAACTGTGTCCCAAGAGGTTTAAGAGGAGAAGATTACTAGAATACCACATAAAGGCATCGCACACTGGCGAGCGTCCCCTCAAGTGCGGCATCTGTCATCAGTCGTTCGTGTACCCCGAGCATTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCTTACACTTGTGAGATTTGCGGTAAATCGTTCAACTCGCGCGACAATCGCAACACGCATCGCTTCGTCCACAGCGATAAGAAACCTTACGAGTGCGTCGCGTGTGGCGCCGGCTACATGCGCAAGCAGCTGCTCTACGCGCACATGAACACCAGCGGACATTTGAACGGATCTATAGTCGTCAACCAACCTAGAGTTATCAAAGTTACTgaaggCACAAATCAACCAACAGAAATTACCAACGTAGAAGCGAAAAATACTAAATATGATACGatatTTGAAGCCAATGAATTGGAAGCGAGCGTAAAATCTGTTGTAAAAGCGGAAACGGAAGTGAAACTCGAAGACGCCAAGTTCTACATAACTGAAGATAAGAAGTTAATATTACAAGATAGTGATAACATAGGGGAGAGAGCCGAGGGCACTATTTTAGAAGCGGTAGATGCCGATCAACTTGGAGAACAGACTGAGATCGTTGCAAACGATGAAAATGGCGGTATGGTGCGTCTCATACAAATCAAATTGCCGGATGGAAACAACGGGTGGGTCGCTATTAACCGCTGA
- Protein Sequence
- MNQCCFICNNRAGLSLRNASSLFGEQNTLQSGKKVSEVVSEIVGKPVLENKVHTSILCRKCYKTCSEYDTIQVRLQTIKTELLEQFKQSLPDHNLDYDNYEKNVCSPPIPKPLLGKKLVLPASKLQPIPPDLLLKVGKFASFSKSNVILPQIKPITASTLNLKVTVGSSVLTQTIKTSTSKPIEKPALDSNSILTSLANALKDDLDSLVTTQSNMNSMSQKNSILSFNVNSLPKDFLSGAILRKLDGNNDEYEKGEETNEDHPMEIDEDCLSVVPVTSADGDMVLQVEGLQSKSDTTPEVSEYLNLPSLDGADEVTDAPKYILGKLEILNEGDEEDDEADDDDDDEGHTIVVDSENGSILRMVTGQKFIYEGGEISLVMPDDDDQQDGDGDQQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSASADRADALLQIVAQDGDMFKCLLCKKNDENTPLEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYATHIASHASPAPAARGAHRCAVCGRSYSSRTLLAEHANVHSGARPHVCAVCGKAFASKYTHQAHLKTHAVRPRPFKCTQCGKSFLTQQNLNQHEKTHSGVKEFVCNICNKAFSTHHNLEVHGVVHSGNKAYVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGICHQSFVYPEHYKKHVRIHSGERPYTCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLNGSIVVNQPRVIKVTEGTNQPTEITNVEAKNTKYDTIFEANELEASVKSVVKAETEVKLEDAKFYITEDKKLILQDSDNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726717;
- 90% Identity
- iTF_00301435;
- 80% Identity
- -