Basic Information

Insect: Cerastis rubricosa
Gene Symbol: -
Assembly: GCA_949152445.1
Location: OX424539.1:5718011-5725186[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00039 0.048 15.5 2.4 2 23 196 217 195 217 0.98

2 10 0.00088 0.11 14.3 4.6 2 20 225 243 224 246 0.93

3 10 9.2e-05 0.011 17.4 1.3 1 23 252 274 252 274 0.98

4 10 0.00015 0.019 16.7 7.0 1 23 280 302 280 302 0.96

5 10 1.5e-07 1.9e-05 26.2 1.3 1 23 308 330 308 330 0.96

6 10 0.00012 0.015 17.1 0.2 1 23 336 358 336 358 0.95

7 10 0.00013 0.016 17.0 2.9 1 23 364 387 364 387 0.95

8 10 0.0054 0.68 11.8 5.4 1 23 393 415 393 415 0.98

9 10 9.2e-07 0.00011 23.7 1.2 1 23 421 443 421 443 0.99

10 10 2.1e-05 0.0027 19.4 1.4 1 23 449 471 449 471 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00039	0.048	15.5	2.4	2	23	196	217	195	217	0.98
2	10	0.00088	0.11	14.3	4.6	2	20	225	243	224	246	0.93
3	10	9.2e-05	0.011	17.4	1.3	1	23	252	274	252	274	0.98
4	10	0.00015	0.019	16.7	7.0	1	23	280	302	280	302	0.96
5	10	1.5e-07	1.9e-05	26.2	1.3	1	23	308	330	308	330	0.96
6	10	0.00012	0.015	17.1	0.2	1	23	336	358	336	358	0.95
7	10	0.00013	0.016	17.0	2.9	1	23	364	387	364	387	0.95
8	10	0.0054	0.68	11.8	5.4	1	23	393	415	393	415	0.98
9	10	9.2e-07	0.00011	23.7	1.2	1	23	421	443	421	443	0.99
10	10	2.1e-05	0.0027	19.4	1.4	1	23	449	471	449	471	0.97

Sequence Information

Coding Sequence: ATGAATATGAATTCCAAAAACCTTGATTTGTGTTGTCGTACTTGCTTGCGAGATGATTCCGAAGAATTGTATGAAATATTTCAAGAAGAGGATACTGGTTTGGTAGATATTGCTGAATTAATAACGTCATATACCTCAATACGGGTGACCATGGAGGATAGATTACCTAAGAAGATATGCAACTGTTGCTACAGTTGTTTAATAAACTTTGTCGAATTTAAACGCACTGCACTTAATGCTGATGCTGAGTTGAGAGAACATTTTGCCAAAATAATTGATAATAAAGATGATGGAAGCATAAAGCAGAATAACaatttaatagaaattaaaCTTGAAGATGAATACAAAGAATATCAAGTTGAAAATAACTTTGATGACAGTGTTGATTCGGAAATTAAAGAAGAAACCTATCCATATAATATAACAACAATGTATTCAGACATCTCAGATGCAAGTCAACTTGAAGGACACCAATCTAAACATAGAAAAAATGCACTAAACATGGAACATTTTGTAACATACAGATCAGGTTCCAAAAGTAAACATTACATGGCCGAAATTAACCACATAACTGCCCAAAGAAAACAATGTGATGTTTGTTTAAAGACTTTCAAGTCCACCAACTCTTTATCAGCtcataaaagaaaacatgtcTCCAAAGACAGGGTTCTCTCATGTTCCGTGTGCAGTAAGGTATTCAAAAAACTATCTCATTTAAAAAGACATGAACTTTGTCATGAGAATAATCGCCCATTCAAATGTTCTAAATGCTCTAAGTCTTTTGCTACAGAAGCAACTTTCATAGAGCATGAGAACAAGCATAATGGAATAAAACCTCATTGCTGTCCGATATGTCAGAAGACGTTTGCTCATCTTTCAACGTTAACTAGTCATATACATATTCATAAAAAAGATAAGCCATATCTATGTCCTACTTGTGGAAAGAGGTTTGATTCAAGCACTAACTTGAATCAGCATATGAAGAGGCATTTAGGACTGAAGTCATTTGCCTGCAACTTGTGTCCTAGGAAATTTATAAGTaaagGTGAATTAAAATCCCATGGGGTGACCCATACTGGTGAAAAGTCATACAAATGCGATGAATGTAACGCAACATTCACAAAGCGCAGTTCTATGACCAAACATAAGCTCTATCGGCATCTTGCTATCAAGCCTTATCGGTGTGATGCTTGTCCTCGGAGGTTTACATGCAAAGACCACCTGACACGACACAATAGAATACATACGGGAGAAAGACCGTATCGTTGTGAAATATGTTATCGTACGTTTACGCAAAGCGCAGACTTGGTCAAGCATACACGCTCTCATCTAGGAAATAATCTGTATAAATGCAACGAATGCAGTCAAAGCTTCAGACTTAAGACCGAACTCCGACAGCATATATCGGAACACTTCATATCTTCACAACTCGAAGCATTGAAGATGACTAGTTCAGACAAACCTCAAACGTTGATTGACAATAATGGTGGAATATTGGGGGTGCCACAGGAAAATGCAATGGTTCAAAGCAGTAATGATAAGGTGATGCAGTAA
Protein Sequence: MNMNSKNLDLCCRTCLRDDSEELYEIFQEEDTGLVDIAELITSYTSIRVTMEDRLPKKICNCCYSCLINFVEFKRTALNADAELREHFAKIIDNKDDGSIKQNNNLIEIKLEDEYKEYQVENNFDDSVDSEIKEETYPYNITTMYSDISDASQLEGHQSKHRKNALNMEHFVTYRSGSKSKHYMAEINHITAQRKQCDVCLKTFKSTNSLSAHKRKHVSKDRVLSCSVCSKVFKKLSHLKRHELCHENNRPFKCSKCSKSFATEATFIEHENKHNGIKPHCCPICQKTFAHLSTLTSHIHIHKKDKPYLCPTCGKRFDSSTNLNQHMKRHLGLKSFACNLCPRKFISKGELKSHGVTHTGEKSYKCDECNATFTKRSSMTKHKLYRHLAIKPYRCDACPRRFTCKDHLTRHNRIHTGERPYRCEICYRTFTQSADLVKHTRSHLGNNLYKCNECSQSFRLKTELRQHISEHFISSQLEALKMTSSDKPQTLIDNNGGILGVPQENAMVQSSNDKVMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00685702;
90% Identity: -
80% Identity: -