Crub006568.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424526.1:5257702-5264517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.014 1.7 10.6 3.0 1 23 200 222 200 222 0.98 2 29 0.00095 0.12 14.2 0.8 3 20 252 269 250 271 0.92 3 29 6.5e-05 0.0081 17.9 0.1 2 23 302 324 301 324 0.96 4 29 0.0004 0.05 15.4 0.6 2 23 374 396 373 396 0.95 5 29 0.013 1.6 10.7 0.6 1 23 412 434 412 434 0.95 6 29 0.0008 0.099 14.5 5.0 1 23 474 497 474 497 0.94 7 29 0.0045 0.56 12.1 4.2 2 23 537 559 537 559 0.97 8 29 0.0024 0.3 13.0 0.6 1 23 609 632 609 632 0.97 9 29 0.0044 0.55 12.1 0.2 1 23 684 706 684 706 0.97 10 29 0.0031 0.39 12.6 5.2 1 23 717 739 717 739 0.98 11 29 0.37 47 6.1 0.6 2 23 751 772 750 772 0.89 12 29 0.0032 0.4 12.6 1.4 1 23 782 804 782 804 0.98 13 29 0.0048 0.59 12.0 8.4 1 23 833 855 833 855 0.96 14 29 0.0035 0.44 12.4 2.8 1 23 866 888 866 888 0.97 15 29 1.4e-05 0.0017 20.0 0.5 1 23 896 918 896 918 0.98 16 29 0.00033 0.041 15.7 0.3 2 23 938 960 937 960 0.97 17 29 3.2 4e+02 3.1 0.3 1 23 978 1000 978 1000 0.89 18 29 9.1 1.1e+03 1.7 1.9 1 9 1007 1015 1007 1029 0.81 19 29 0.0026 0.33 12.8 2.8 2 23 1040 1062 1039 1062 0.95 20 29 0.016 2 10.4 0.2 2 23 1085 1106 1084 1106 0.95 21 29 1.5 1.9e+02 4.2 3.6 2 23 1149 1171 1148 1171 0.95 22 29 0.0063 0.78 11.6 0.2 2 23 1187 1208 1186 1208 0.95 23 29 8.4 1.1e+03 1.8 4.0 5 23 1218 1236 1215 1236 0.94 24 29 0.016 1.9 10.4 0.8 2 23 1247 1269 1246 1269 0.95 25 29 0.21 26 6.8 3.3 2 23 1286 1304 1286 1304 0.90 26 29 1 1.2e+02 4.7 2.0 2 21 1308 1327 1307 1328 0.93 27 29 0.52 65 5.6 0.9 2 23 1377 1398 1376 1398 0.93 28 29 0.0023 0.28 13.0 0.2 2 23 1409 1431 1408 1431 0.96 29 29 3.9 4.9e+02 2.8 0.6 2 19 1469 1486 1468 1489 0.90
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTTGGAAAATGCAGGCTCTGCCTCAAGCTCGGCGACTTTTACTCCATCTTCACGGTCGACAATGCTTTACAGCTGGCGGAGATGGCAATGGAATGCGCCCGGGTGAAAATATACGAAGGCGACGGGCTGCCTGACAAGGTGTGCTCAGAGTGCATACAGAAGCTCAGCAGTGCGCACATCTTTAAGCAACAGTGTGAGCGAGCTGACCAGGAGCTCCGCCGCAACTATGTGCCGCCACCCGGATTCAGCATCAGCGAGCCCAACAGACAGAGCAGCGATTCCGCCTTTTCCAATCATACTGATACTTCCAATTTGACCAAACCTCCGTCTTCCATCGAGGAGAAGGTAACCCCCGCCGCCAGACCCCGGAAACGTAGCGCGGACAGCGTCGACAACGTATCCATTGGCGGCGCCTCGAGCGACTACCGACCCAGCGGGTCCAAGCGAGTCGAAGAACTCCGACGCACCATCAAGAGACCCAGAAGACTGTCAGGACACGTCTCGCATTTAGATTCAGATTACGAAGATAACAGCGGCTCGTACTTACCCGATACAGATTCCGACGAGCCCTTACTTAAAAATAGCTTCAATTGTGATCAATGCCCCAAACATTTCCTATCTCAAAGAAGTCTCAATCTCCACAAGAGGGTACACGACAAAAAAGAAAGTCTTGGCGAAAACGCCGTCGTAGATATACCACAGAGATCAGAGGACGCCGCTGATGTGGAGGACAAACTGGACTGCCAGAAATGTGGCAAGACATTCAAGTTAAAGATCATGCTGAAACGTCACCACGAAATATGCGGGAAGAATGTAAACCCTGTCATGCCTCCACAGAAAGAGTTGCTTATCGCTCTAGAACCGATCGACGGGATGGCGGACCGGAACATAGTGTGCGAAATGTGCTCCGCCAAATTCAAGACTGTCGACAATTTGGCGAAGCATATGAGGGTAGTACATGCGGCCGTCTTGAAAAGGGaagataaaaaacgagaaaacggAAAAGTGTCAGTTCCTTGCTTGTTTTGTAAGAAGCAATTTGACGATTACTATGTTCACAATGCGCATTTCAACAAGTGTCCGAAAAGGGACGACTCTTTGCCACTTGAGTGTCCTGTTTGTAAGAAGATAGTGACAAGAAAGAGCAATTATTTCCTACATCTTAAGAACTTGCATTTAGAGCCTCGGAAGAGCTCAACGGAGCCGGCGGCGCAGGAGTACCACGAGTGTAAGATGTGCTTCAAGAAGCTTCCGTCGCAAGACTTGCTGATCACGCATCTAGCGGCGCACGTGTCGAACATCGATGACAATAACGGTGCAGCTGACAACGAATCTAGggcAAGCACTATAGACGACTCTGCATCTATCCAATCAGTACATAGCCAATCCCACACTCCCACCGCTCTACATAAATGTCCAACATGTGACAAAGAGTTCAAATACAAGAAAGCTCTTCAAACTCACGAGGCTAGGTGTCATTCAGAAGTACCTGTGGTAGTAAAGGTAGAGCCACCTGATAAAGCATCGACGAGTCTTCTAAGCGAGACTGTCTATAGGCAGACTGAGTCAGAATCTAGTCAAGAAGAGGATGACAATACTTGTGATAtctgtgagaaacagttctcgtATCGTCGGCTCCTCCTCCACCACAAGAAAACCAAGCACAATATGAGCTCAGGACACAAGCGCGCCAAAATCTACCTCAAAGACTGCTCCGTGCGCTGTCTCATCTGCGACCTCGAGATGAAGGTCGGAGCGATCAACGAACACAACCAGACGCATATAGCAAAGAACATGAGGCCAAGGAACGTGTACACCTGCGCAGAATGCGAGGACACCTTCAAGAGCTGCTCTGCTCTCGCGAACCATATAAAACTGATTCACCGACTAAAACAGAAGCGGATCGAAGATTCCGTGAACCCGTCGGATTTTTGTGAAGTCGTTGTGGCAAAAGCGGAACCCCTGGACTGGATCCAGAGTCACAACGACTTTGGTGAGGTTCCGGGCGAGAGCAAGCCGCTGGTAGACCTGAGCGGTTTCACCTGCCCCATCTGCAGCAAGAAGATGCCGACTCTCATCTCTTTGAAGAGGCATGTCAACTGGCACTCTAGTGTAGGCAATAATATTGAGAAAAAGTACGAGTGTGTCGTTTGTAAAGAGgCTTTCAGGTTTCAATGCCACTACAAGATCCACATGCGGCAGCACTACCACGACACGAACCTGGACCCCAAGCACCTCACGTGCACCATCTGCGGCCGGCGCAGCAAGCACCTCCGCGCCGCGCAAGCGCACAACGCCTACCACAAGCAGACGCGCTTCCAGAACAAAGACTACCAGTGCTCCATCTGTGAGCGAGTCTTCCAACACCGCAAGGTCTACCTCTCGCACATGGCCATACACTACAAGAAAGGCGACAGCGTCCACAACACCATCGTTGGCGACGTCATGCCCGGTAACGCCGACAGAACAGTCTTCGACGGCACACACACCTGCCACCACTGTGGCAAAGTCTGTGATTCAGCAAACTCGCTCAAACATCATCTCATCTGGCACACCTCCAAAACTTTCCTGTATGGCGCCCGCCATGAGTGCACTATCTGCAAAGTGAAGTTCACTAACAAAAGAAGACTGGAACTTCACACCCGAGCCCACTTCGAGGATGACAATGGTCCCTATAAGTGTCCCATTTGCAGCAAGGGGTTCACCGACGAGGGCTACTTCCAAAAACATGTAAAGGGACACAATTTCGATCATCAGTCACATAAAAAGAGGATAGACAAAATCAGAAAGGATAAAGTTAAATGTCCGATATGTACGCGGTTCTATCCGGACCTGGTGAAGCTGATCCGCCACCTCCGGCGCACGCACCCCGAGAGTAAGATGATCAAGTCCGACCCCGACGCTCCACCGCCGCTCTACTACTCCTGCAAATTGTGCGCCAAAATATTTCTAGACGAACGAAGACTGCAGTCCCATGAAGAAGCACATTTGAGAAAGCCCGAGTTCTTTAAATGCAAGTTCTGTGGAAAGAAACACATATCGCTTAAGAGCCACAGCATCCACGTAAAGGGTCACTTAGCGCAGAAACATTACGACAACCCGTTGAAGTGTCCGCACTGCGACGAGACGTTCGTAAAGGGCTACGGGCTGCACCACCACTTGCGCGACGCGCACGGCATCAACGAGAACTGGATCGCCGACCGCACGGAGCAGCCGCTCTCCGGCCCGCTCAAGGACCTACAGTGCTCCATCTGCATGAAGGTGCTCGCCAGCAAGGGGAACTACGAGCGACACATCGACTACCACAACTCCTTGAGATGTAACTACTGCTTCGATTACTTCAGCTCGCTCAGGTTCCTAGAGGGACATCTGGCATTCTCGTGCGAAAAGAAAAAGCTTTTAGGCGACACCGAAGTTTACCCTAAGAAAGTGAAGTGCAATATTTGTTACAAAGCATTCCATGTTCAAGTGAAACTAGACTGCCACCTGCGCACGCAACACGGCATCATCGTAGACAAAGAACGTTCCGCAGGCAAGCAAGAAATTGTTTGTGATTATTGCTTCAGAGTTTTCGAAAACGAGTATGCTCTAAGTACTCACAAGATTTACCATCGCACGATTGGCTACTATGGATGTATTTACTGCAAAAGGAAGTTTAACACATTGACTGTGTATCGCAAACACAAGAACCACCACATGGCGCAGCTCAATGTAGATAACCCGACGAAATGCGAACACTGTGACGAAACGTTCGTCGCTTTCAGGGAAATGATATACCACATGAGGGACGTGCATGGAGATGATAAGGAATGGTTCACAGAGCCCAAGGAGTCTATTGAGGAGACGTGCCCCATCTGTAACAAACGGTTCTACAACCTTCACAAACATCTCACTTACCATGAACAAAACAAGTGCAAGAAATGCAACGAATATTTCTACTCCAGGATTGACTTCGATAGTCATCTTTGCGCAATTGAAAGCGATGACGAAGGCACGGGATACGTGGGCAACGAGAACGCGTTCCAGTACGAGGAGTGCAGGTTCTGCTTCAAACCTATCACCAAGAAAAGCACGAAACGGCTTCACGACCAGATACACAAGGGCTCCGGCTCTATATCCTGTAGATTCTGCTCACTTAAGTTCAAAACTATGGACGCCTTTAACATACACGCTTTCTCGCATCGAAGCAGAAAATACAACAAGAAGCCGATAAAATGTCGGATATGCGGCGAGAAGTTCGTTAAATACGGACCATTTATAAAGCACATGAAGTTAATTCATAAGTCGCCGAAGAAGATCCACTACCGCGCGGTAGTCAAGCCAGAGAAATGTGTCGTTTGTGGGGATGACTTCCCGAATCTTCACAACCATTACCGAGCCCACCTGCTGAACCAGTGTCAGGGCTGTCTCAAATACTTTACCTCTTACAAGGCGATATCTGCGCACGAGTGCGGCAAAGAGGACTCGGACCCGTCGAAGGTGTTTACAAGCGACGCTAACTTGAACGAGCTGATAAATACATATGTTCCTAAGGACGAGAAGGATGACGAGAAGTACTACGGCCACACCGACGACGAGGAAGACGATGTTGAGCTTCAAGTGCTTGGCGAAGAAGAGGAGAGTCAGGAGAGTAAAGACATACCCATGCTCCAATCCCCGATCATATCGGATGTTCTGTCGCTGTTCAAGGCGGAGATGAATGGGCTGGGCGAGGTGGACGACGTGGTGGATAACATGGATGACGTTGTCGACATAACTGATGATGATTCGGTGGGTGTTGATGATTCCGTTATACCAGTTGTTGTCGTTATAGATGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECARVKIYEGDGLPDKVCSECIQKLSSAHIFKQQCERADQELRRNYVPPPGFSISEPNRQSSDSAFSNHTDTSNLTKPPSSIEEKVTPAARPRKRSADSVDNVSIGGASSDYRPSGSKRVEELRRTIKRPRRLSGHVSHLDSDYEDNSGSYLPDTDSDEPLLKNSFNCDQCPKHFLSQRSLNLHKRVHDKKESLGENAVVDIPQRSEDAADVEDKLDCQKCGKTFKLKIMLKRHHEICGKNVNPVMPPQKELLIALEPIDGMADRNIVCEMCSAKFKTVDNLAKHMRVVHAAVLKREDKKRENGKVSVPCLFCKKQFDDYYVHNAHFNKCPKRDDSLPLECPVCKKIVTRKSNYFLHLKNLHLEPRKSSTEPAAQEYHECKMCFKKLPSQDLLITHLAAHVSNIDDNNGAADNESRASTIDDSASIQSVHSQSHTPTALHKCPTCDKEFKYKKALQTHEARCHSEVPVVVKVEPPDKASTSLLSETVYRQTESESSQEEDDNTCDICEKQFSYRRLLLHHKKTKHNMSSGHKRAKIYLKDCSVRCLICDLEMKVGAINEHNQTHIAKNMRPRNVYTCAECEDTFKSCSALANHIKLIHRLKQKRIEDSVNPSDFCEVVVAKAEPLDWIQSHNDFGEVPGESKPLVDLSGFTCPICSKKMPTLISLKRHVNWHSSVGNNIEKKYECVVCKEAFRFQCHYKIHMRQHYHDTNLDPKHLTCTICGRRSKHLRAAQAHNAYHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDSVHNTIVGDVMPGNADRTVFDGTHTCHHCGKVCDSANSLKHHLIWHTSKTFLYGARHECTICKVKFTNKRRLELHTRAHFEDDNGPYKCPICSKGFTDEGYFQKHVKGHNFDHQSHKKRIDKIRKDKVKCPICTRFYPDLVKLIRHLRRTHPESKMIKSDPDAPPPLYYSCKLCAKIFLDERRLQSHEEAHLRKPEFFKCKFCGKKHISLKSHSIHVKGHLAQKHYDNPLKCPHCDETFVKGYGLHHHLRDAHGINENWIADRTEQPLSGPLKDLQCSICMKVLASKGNYERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLLGDTEVYPKKVKCNICYKAFHVQVKLDCHLRTQHGIIVDKERSAGKQEIVCDYCFRVFENEYALSTHKIYHRTIGYYGCIYCKRKFNTLTVYRKHKNHHMAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWFTEPKESIEETCPICNKRFYNLHKHLTYHEQNKCKKCNEYFYSRIDFDSHLCAIESDDEGTGYVGNENAFQYEECRFCFKPITKKSTKRLHDQIHKGSGSISCRFCSLKFKTMDAFNIHAFSHRSRKYNKKPIKCRICGEKFVKYGPFIKHMKLIHKSPKKIHYRAVVKPEKCVVCGDDFPNLHNHYRAHLLNQCQGCLKYFTSYKAISAHECGKEDSDPSKVFTSDANLNELINTYVPKDEKDDEKYYGHTDDEEDDVELQVLGEEEESQESKDIPMLQSPIISDVLSLFKAEMNGLGEVDDVVDNMDDVVDITDDDSVGVDDSVIPVVVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_01532347;
- 80% Identity
- -