Crub006983.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424526.1:11390753-11392690[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-09 4.4e-06 27.6 0.0 3 41 16 55 14 57 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGCCACTATAGAAAAAAAACGGACAAGTCATACACAATGGAAGAATTGCAGCAAGCAGTACAAgatgtcaaaaataaagtaatgacGAGTTACCAAGCTGAAGAAATATATGGCATTCCTAGATCAACCATTGTAACTAGAGTTTACAATAATCACATGAACGACAACGTTGGAAGACCTATAGCTCTCGGGGAAGATGTGGAGAGAAGAATTGCCCATAGCTTACATGTTATGGAAAAACATGGTTTCCCGTTAACTAGAAAAGAAGTAGCTGTTTTGGTATCTCAATATGTTCGCCAAAATGGAATCGACAATCCCTTCAAAAATGATTTGCCAGGAAAAGACTGGCTCCAGGCATTTCAGAAAAGGAACAGTCTCTCAATCAAAAAGCCTCAATCCGTTGAGATAGCTAGAAGAAAGGCTTGCGATCCTTTTATTGTTTATAGTTATTTCGATTTACTAGAAAAGGTATTGAAAGAACTGGACCTGACAGATAAACCGGAGCAAATTTATAACTTAGATGAGACAAGCATATGTAATGATCCTGTTAAAGGCAAAGTAATCGGTAAAAAAGGTTTCCGCTGTACTAGAACGACTAGTGGTCCCGGAAGAAATAATACAACGGTTTTGTTGGCGACGAATGCTTCTGGCAACAAAGTTCCGCCGTTAATCATCTTTCAAGGAAAACACCTCTGGTCCGAGTGGATGTTTAAAAACGAAAACATACAAACAGCTTACGCCGTAAGCGAGAAAGGCTGGATGCAGACCagcatatttgaaaaatatctgACATCTGTATTTGTTCCTTCGCTGGGAAGTGTTAGGCCGGTGCTACTAATATACGACGGGCATGCTTCTCATGTCGATCTAAATGTCATACAATATGCGGCCTCTGAAGGTATCACAATTTTAAAGCTTCCACCACACTCGTCTGATGTTCTCCAACCCTTGGACTGCAGCACAATGAAACCTCTTAAAGACCGATGGGAGGATGAAATAATAAGATGGCAGAGACTTCACATAGGTTCGAAATTGCCGAAGTCAGAATTTGCCAGGATTTTGACAAAAATATGGAACGAACTAGattgtattattttaagaaaCGGATTCCGCAAAACAGGTATTTATCCTCTTAACCGAAATGCCATCCGAGAGGAGATTTTCGACCCATTGACGTTGCAAAAATGGAAGACTTCTCAAGCCGAAACCCTTGCAGTGAATCACAAACAACCACAAGGTGAAGCTTACAACGCAACTGAACCACGTACGTACAATGATATGCGTTTCAGTAAAGCCGTTCCCAGTTTACTAACAATTGTTTTGACAAAAATCAACGAATATCATAGCAGCGGTAAGATCCCGGAAAAAATCTGCGACAAGCCTACACAAAATTGTGTTTCAGCTGATGTATCAGATACTGTGTTCGATGAAAAGAACGCGATTTATAGCAAAGACGAGACGCAAAATACACTTGTCACAGTGCAAAACACGATTAAGCTGCCGATACCGAAAAGAATTGACGTGGAACGATTGACATCTTTAAAGATTTTAGATTGCAAGATAGTTAAACCTTCAGAAAACGCTATCCAACCAGTTTCTTTTGAGGAACTTTTACTTAAGAGTATTGCCAAAAATGAtccaactaaaactaaaaaaaaacgcgtCCCCAATAGCAACGCGGAAGTACTGACTTACAAAGAAGTACTGGATCgtttaaaacaagaaaaagaagAGAAAGAGAACAAAACATTagaaaaggaaaacaaaaaaatgcaaaaagagAAATTGAAGCATGAACAAAAccagaacaaaaaacaaaagaagcaaaaaccaaagaaaaaagaaaatggagTAAAAAAAAGATCGAAAGTTACTAAAAGGTCTACTCAACGAAAAAAAgtctccaaaaaaaaatttaaattttggtgCTAG
- Protein Sequence
- MVRHYRKKTDKSYTMEELQQAVQDVKNKVMTSYQAEEIYGIPRSTIVTRVYNNHMNDNVGRPIALGEDVERRIAHSLHVMEKHGFPLTRKEVAVLVSQYVRQNGIDNPFKNDLPGKDWLQAFQKRNSLSIKKPQSVEIARRKACDPFIVYSYFDLLEKVLKELDLTDKPEQIYNLDETSICNDPVKGKVIGKKGFRCTRTTSGPGRNNTTVLLATNASGNKVPPLIIFQGKHLWSEWMFKNENIQTAYAVSEKGWMQTSIFEKYLTSVFVPSLGSVRPVLLIYDGHASHVDLNVIQYAASEGITILKLPPHSSDVLQPLDCSTMKPLKDRWEDEIIRWQRLHIGSKLPKSEFARILTKIWNELDCIILRNGFRKTGIYPLNRNAIREEIFDPLTLQKWKTSQAETLAVNHKQPQGEAYNATEPRTYNDMRFSKAVPSLLTIVLTKINEYHSSGKIPEKICDKPTQNCVSADVSDTVFDEKNAIYSKDETQNTLVTVQNTIKLPIPKRIDVERLTSLKILDCKIVKPSENAIQPVSFEELLLKSIAKNDPTKTKKKRVPNSNAEVLTYKEVLDRLKQEKEEKENKTLEKENKKMQKEKLKHEQNQNKKQKKQKPKKKENGVKKRSKVTKRSTQRKKVSKKKFKFWC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036610; iTF_00302047; iTF_00124193; iTF_01172272; iTF_01172268; iTF_01172269; iTF_01172270; iTF_01172273; iTF_01172274;
- 90% Identity
- iTF_00124193; iTF_00036610; iTF_00302047; iTF_01172272; iTF_01172268; iTF_01172269; iTF_01172270; iTF_01172273; iTF_01172274;
- 80% Identity
- -