Crub009141.1
Basic Information
- Insect
- Cerastis rubricosa
- Gene Symbol
- -
- Assembly
- GCA_949152445.1
- Location
- OX424527.1:21232827-21236958[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-07 0.00063 20.7 1.4 17 45 1 29 1 29 0.97 2 3 1.6e-08 2e-05 25.6 0.1 2 41 49 88 48 92 0.92 3 3 1.9e-12 2.5e-09 38.0 0.0 1 40 128 168 128 172 0.88
Sequence Information
- Coding Sequence
- ATGTCACAGAAAGCTGCCTCACGTCGTTATGGAACTCCTCGAAGAACTCTTAGAAAACATTTGCAAACAAGGAGTTCAGTAAAACGAATGGGAGGAAGGTCTCGGAAATCAGGATCAAAGAGTGGAAAACGAGCTCTGTGGGCGGAAGAAGACTTAAGGGCCGCTATGGCAGCTGCTAGAAATAGAGAAATGACACAAACTGCTGCAGCAGAGCGTTTTGGAATCCCTCTACGGACTCTCTCCGACCATTTGAGAACGGGGAGCTTAGTGAAACGTTTAGGACGAATATCAACGTTCAATGATGAACAAGAAAGAAAACTCGTGAAAAGAATACTCAGGCTTTCAAAAAATGAGATTAAATTGCCAAGGAGAGTAACATGGACAGAGGAGGACATGAACGGAGCAATAACGGCAGTAATTCATGGTAACATGACGCAGTGCGCTGCAGCAGAACTATTTGGCATTCCCAGACCAACACTAGCTGATCACCTGAATAAAGGAAACATCGGAAAACGACCAGGTCGAAATTCTATAATGAACGAAACCCATGAAAAGGTTCTCGTCAGCAGGCTTATAGAGCTAGCTAACAGTGGAACACCAGTTACTCCACATGTAATCTGCAAGCAAGCGTTCCTTTTTTGCGAGGAGTTTAATTTAAagcataattttaataatgaaactCGGATCGCCGGGAAGAAATGGTTCAAGAGGTTCTTGAAACGACACCCTGAGGTTTCGCATTGTTTTACTTGA
- Protein Sequence
- MSQKAASRRYGTPRRTLRKHLQTRSSVKRMGGRSRKSGSKSGKRALWAEEDLRAAMAAARNREMTQTAAAERFGIPLRTLSDHLRTGSLVKRLGRISTFNDEQERKLVKRILRLSKNEIKLPRRVTWTEEDMNGAITAVIHGNMTQCAAAELFGIPRPTLADHLNKGNIGKRPGRNSIMNETHEKVLVSRLIELANSGTPVTPHVICKQAFLFCEEFNLKHNFNNETRIAGKKWFKRFLKRHPEVSHCFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -