Cleu023809.1
Basic Information
- Insect
- Cerastis leucographa
- Gene Symbol
- -
- Assembly
- GCA_963082945.1
- Location
- OY720371.1:13534920-13543458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 1.2 10.9 0.1 1 23 215 237 215 237 0.97 2 12 0.00048 0.055 15.2 3.6 1 23 243 266 243 266 0.94 3 12 5.8 6.6e+02 2.3 2.3 1 23 280 302 280 302 0.93 4 12 6.4e-05 0.0072 17.9 3.1 1 23 562 584 562 584 0.98 5 12 0.047 5.3 8.9 2.1 3 23 591 612 590 612 0.97 6 12 0.00016 0.018 16.7 0.8 2 23 621 642 620 642 0.94 7 12 0.00023 0.026 16.2 1.1 2 23 646 667 645 667 0.97 8 12 0.065 7.3 8.5 1.4 2 23 681 703 680 703 0.96 9 12 7.5e-06 0.00085 20.8 2.0 1 23 709 731 709 731 0.98 10 12 0.012 1.3 10.8 1.7 2 23 738 759 738 759 0.98 11 12 0.00039 0.044 15.4 2.6 1 23 765 788 765 788 0.95 12 12 0.0057 0.65 11.8 1.9 1 23 792 815 792 815 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGATGCAATTCCGGTGTTAAGCCCCAAGAAACCATATCAAAAACCGTTCAAGAAGATAACAAGAGCAGTATCAGAGTCTAATAATGTGGAAAATACCTTTGGACCAAGGAAAAAGGCCTACGATCCTGGTGTACCATTGACGACGAAAGTTGCTGTGGAGTATTTGTTATCCGGGAAGCTAAAGACGAGTGTTTGTCGTTACTGCCTTAAAGTAACGGTAGGATTGTCTGAACTAGATCAGATAATGCAGATAGCTGGCACAGGAGTCATCTATAAAGTGTCGATAAGAGAAATGATAGCCTGTTTCTACCCTTTCAAGGCTAGACAAGATGAAAACTTCCCAGAAAAGATATGTCAAAGATGCATAGACAGAGCTCTCAATGCATACCTGTTCACGCAGCAGTGTGAGCAGGCTGAAAGGGCTTTACACAACTGTTTTGAGGACATCaacgaaaaattcaataaaCTAGACCCCATCGAGAGACCAAAGAAGAGAGGAAGACAGAAACTACATCCAAACTTTAATAAGTTATACATAGAAAATAGTAAAGTAATGGATTACGCTGAACCATTACGGAATATTATCAATTTACAAACAGAATCGTTGAGCAACGAACCTGATTGGAACGAATTTGAATGTAAAAAGTGCTGGCAGGTACTCCCAGACCTAGAATCATTGCTAAACCACGAGCAAATACATCCTAAATACATGTGGTATCATTGCCGATTATGTGGTAAATCTTTTGTAAAACTTAACCAGCTAAAGAAACATTTCAACCAAGTCCATGTAAAAGGAAAACAGGTTACCCAAGAGGCAGCCAAGACTTTCAAATGTCTGGAATGCGGGAGTGTAACAGAAAACTATGTACATCATCTACAACATATAGAGAAACACAAATTTAAAAGTGTAATGAAACATTTAATAGAGAGGAAAACAGACCAACTATGCTTGGTTTGTCTTAAGAAATGTACGGATTTAGTGGAGCTCGACAAAATGGTGTGCATACACGGAAATTGTCCAGAACTGGTTGGGGATAAAACACTGAAAATGGTGTTAGCTTCTACTTTACCTGATATGAATTACCTACACGACTTCATTGGTACAAAAATATGCGAAAAGTGCCTTAATCATGCAATCACTTCATACATTTTTATACACCAGTTCAATTTCACTAGAGAAAGATTAGATTTGTGTGTTAGCCTCATGTTAGAGAACCTTAATGAAATAAAACCAAATGGTAACGTTTTCGTCCAAGTTTCACCGCCAAGCATTATGGCACCTCAAGAGGAGTTGGATGAATCTTTACTTCTAGATGAAAATGACATAGATGAGAGCAAACTCAAAATAGATGTCCTAGAAGATGAGTTTAGAGTCAAATCAAGTGAGAGTGAGTCAGAAGTTACTGGCGAACTTACTCCACTATCAAAACGGTTTAAACTAGAACCAAAATCTAGCCCTGAAGAAGAAACAATCGATTCCTTTTCACACACACAGTTTCAAGCAGATATAAGATCAACACCAGAAATAGAGAATTTAGCTAGAAATGCAACTAAAACTTACATGAATAAAAAACTAGTTAACGGCTTACAAAGTTCCAAGTACCCTGTAGATGTTTGCAGCGAATTTTTAACTttcaacaaaagaaaaaatgttaaaaaggtTTCGGTAAAGTTTACTTGTCCGTTATGCAGTAAACATTTTATATCAGAGTATTTCTTAAGAAGGCATATTCTAAAACATGTGAATAAGAAAGTTCTTTGCAATATATGTCTCGGTGTATTCAAATCAAAGTTCCATTTGTATGAGCATACTAAAATGACACATTTACAAAACGAGAGCTTTTATATGACTTGCAAAGAATGTGGTAGGAATTTTACTGATACGGACAAATTACAATCTCACGAAGAGAATCACAGAATTAAGCCTTGTCAACTTTGCAATAAGATCTATGTTACCCAAGCACATTACGAGAATCACATTCAACGACACGCTGttaaattgaaacttttaaAACAGAAACAAGCCCAAACATGCAGTTTCTGCGAGAAAGAGTGTTCAAACGACAATGAACTCTCTGTCCATGTAAATAAagtacatttacaaataaaaccaTACAGTTGTGATATGTGCGATAGACAATTTTATACTGAAAGTAATTTGAAGAATCATAAAAAGGTACACAGTTTGCCTTCAAAGGAAACATGTGAATTTTGTAGTAAAACTCTTTTTAGTAGAAAACAGTTGGTAATTCATGTTAGGAAACATATCGGCGCAAAACCTTTTTGCTGTCAAGTTTGCGGTCAAGCGTTCTATACGGCGTACAAAGTTAGAAAACATATGAATTTATACCATGGCGGCCGATTCTGCTGTAGAATTTGTAAATCTATATTCGCAACCAAATATGAACTTAAGGATCACGTGATTAGAGATCATAACGTCATTTAG
- Protein Sequence
- MDEEDAIPVLSPKKPYQKPFKKITRAVSESNNVENTFGPRKKAYDPGVPLTTKVAVEYLLSGKLKTSVCRYCLKVTVGLSELDQIMQIAGTGVIYKVSIREMIACFYPFKARQDENFPEKICQRCIDRALNAYLFTQQCEQAERALHNCFEDINEKFNKLDPIERPKKRGRQKLHPNFNKLYIENSKVMDYAEPLRNIINLQTESLSNEPDWNEFECKKCWQVLPDLESLLNHEQIHPKYMWYHCRLCGKSFVKLNQLKKHFNQVHVKGKQVTQEAAKTFKCLECGSVTENYVHHLQHIEKHKFKSVMKHLIERKTDQLCLVCLKKCTDLVELDKMVCIHGNCPELVGDKTLKMVLASTLPDMNYLHDFIGTKICEKCLNHAITSYIFIHQFNFTRERLDLCVSLMLENLNEIKPNGNVFVQVSPPSIMAPQEELDESLLLDENDIDESKLKIDVLEDEFRVKSSESESEVTGELTPLSKRFKLEPKSSPEEETIDSFSHTQFQADIRSTPEIENLARNATKTYMNKKLVNGLQSSKYPVDVCSEFLTFNKRKNVKKVSVKFTCPLCSKHFISEYFLRRHILKHVNKKVLCNICLGVFKSKFHLYEHTKMTHLQNESFYMTCKECGRNFTDTDKLQSHEENHRIKPCQLCNKIYVTQAHYENHIQRHAVKLKLLKQKQAQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCDRQFYTESNLKNHKKVHSLPSKETCEFCSKTLFSRKQLVIHVRKHIGAKPFCCQVCGQAFYTAYKVRKHMNLYHGGRFCCRICKSIFATKYELKDHVIRDHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_01533379;
- 80% Identity
- -