Cleu026382.1
Basic Information
- Insect
- Cerastis leucographa
- Gene Symbol
- -
- Assembly
- GCA_963082945.1
- Location
- OY720375.1:6488987-6492119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0091 1 11.1 0.5 1 23 63 86 63 86 0.91 2 19 0.044 5 9.0 0.0 2 23 113 135 112 135 0.96 3 19 0.02 2.2 10.1 1.7 1 23 157 179 157 179 0.98 4 19 0.0016 0.18 13.5 0.8 1 23 183 205 183 205 0.97 5 19 0.015 1.7 10.4 1.7 2 23 241 263 240 263 0.95 6 19 5.7e-05 0.0064 18.1 1.7 1 23 270 293 270 293 0.97 7 19 0.00091 0.1 14.3 5.2 1 23 299 321 299 321 0.97 8 19 2.9e-06 0.00033 22.1 1.4 1 23 327 349 327 349 0.98 9 19 0.79 89 5.0 0.6 1 20 355 374 355 376 0.93 10 19 0.024 2.7 9.8 0.5 1 23 453 476 453 476 0.89 11 19 0.16 18 7.2 0.2 2 23 503 525 502 525 0.95 12 19 0.00017 0.019 16.6 0.4 1 23 547 569 547 569 0.98 13 19 0.00019 0.021 16.5 1.0 1 23 573 595 573 595 0.98 14 19 2.1 2.3e+02 3.7 3.0 1 14 600 613 600 623 0.89 15 19 0.0053 0.6 11.9 2.5 2 23 631 653 630 653 0.95 16 19 0.00014 0.016 16.8 2.4 2 23 661 683 660 683 0.95 17 19 0.00036 0.041 15.5 2.1 2 23 690 711 690 711 0.97 18 19 1.6e-05 0.0018 19.8 2.5 1 23 717 739 717 739 0.99 19 19 1.8e-05 0.002 19.6 3.1 1 23 745 768 745 768 0.98
Sequence Information
- Coding Sequence
- ATGAAAGCTATCAAATCTCCAAGATCTGCAAAAGGCACTATCGGCAGTCAGGCGCTTAAAGAGAATTTATTGAAGGTTCGATCTCAAGTAACGGAAACAAGAGAGATAGACAAACATCTGCAGAATATTCGAAACATTCTCTTTTATTCTAATGCTACTCCTATCAGAAAACACACAGCACATGGTTATCTATGCGCCTTCTgtccaaaatattttactttgccGAAAGACCTCAAAGTACATACGCTAGAAAAGCATGACAACGAAACTAAAAGCCGTTTCATGAAAGGCTGCCTCATCTTTAACTACGCCGTTAAACTAGACATTACTGGTATACAATGCAACATATGCGACAAAGATATTGACGGACTAGAAACACTGATGGATCACTTAAAATCTGTCCACTATAAAATCATACATACAGACATCCCAAATCTTATTGTACCTTTTAAATTTGAACATGATACGTTTAGGTGCGTCCTATGCCCTAATATGTTCGACTACTTCAAGATGCTACAAGAACACATGCATGTACACTACAACAATTACAACTGTGACGTTTGTAACGCGCCCTTCTTAAATAAGAGAACTTTAAAAAGACATATGTCCCAACACAAACAAGGAGACTTCTCTTGCAGGTTTTGTCTAAAAGTGTTTGACACAAATATCAAGAAACGATGCCATGAAAAATTCACACATACTCATGACCAGAAACGGAATAAATGTGCACATTGCAATGAAAAATTCGTTAGCTACGCACAGAGGAATAACCATATGGTGAAAGAACATGGCGCGGAAGCCCTCATCTTTAAATGTTTAGCCTGTGACAAGGAATACTCTACCAAAGAATCATTGACTCGACATACAAAACGGGATCACTTGCTTGAAAGGAAACACGAATGCCAGCACTGTGACATGAAGTTCTTTAGAAAGAAGGACCTGAATATTCACGTGTTAAAACACACAGGCGTGAAAAGTTTCAGTTGCGATATTTGTTTGAAGGCTTTCGCTAGAAAGGATCATTTAACGCAGCACTTGAAAATACATTCCGAGGACCGGCAATATAGATGCGCACAGTGCGGTCTCGGCTGCCATACAGAAATTAAATTAGAAAGTCATGTAAGTAATATATTAAACACACTCAGTGCACCGAGACCTACACGAGCAAACGACAACAAAGTTGATTGGACGGTAACGGTCGCAAAAAAAGGTAGCTTAAAGGCGATCAAAGAAGAAATATTAAGTGTTCGACCTCTTAAAGCAGACAAAAGAGAGATAGATAAACATTTGCAGAACATCCGTAATATACTCTTATTTTCTAATGCTACCCCCATCAGAAGTTACACAGGAAATGGTTACTTGTGCGGCTTTTGTCCAGAACACTTTATCATGCCAAGTGATCTCAAGATACATTCACTGCAAAAACATGACAACAAAATGAAAAGCACATTTATGAGAGGCTACCCCTTAAGTTCCTACGTCGTTAAAGTAGACATAACTGGtttgaaatgtgaaatatgCGGTCATGATATTAATGGTTTAGAAAAACTGATGAGCCATTTACAATCTGAACACTACAAAATTATGCACACAGATATCAGAAATCATATTCTGCCTTTTAATCTAGAAGGCAACACGTTCAAGTGCGTACTATGCCCTAAAATCTACGAACGCTTTAAGCTTCTCCAAGAGCATATGAATGTACACTATAACAATTATAATTGTGAAACCTGCAACTCTCCTTTTGTAAACAAGAGAACCCTGAAGAGTCATATGGCTCGACATAAGCAAGGAGAGTTCTCTTGCTCGTTCTGTTCAAAAGTATTTGATACAAATGGCAAAAAATTATGCCACGAAAAGTTTGTACATATAGGAGATCATAGACGAAACAAATGTCCACATTGCAACGAAAAATTCACGACTTACGCAAAGAAAAATGAACATATGGTGAAAGAGCATGGGGCAAACCCTCATCTCCTCAAATGTATGGCCTGTGACAAAACGTTTACAAGACGAGACAGATTGACTCGACACACTAAACGGGATCACTTActtgaaaggaaaaatgaaTGCGAGCACTGTGATATGAAATTTTATGGAAAGAAAGAATTGAATATGCACATGTTAAAACATACAGGCGAAAAACAATACAGGTGCGATGTCTGTTTCAAAGCTTTTGGAAGGAAACATACATTAAGAGAACATTTAAGAATACATGCGGATGACAGAAGATTTAAATGTGAACAGTGTGGACAAGCGTTTGTGCAGAAATGCAGCTGGAAAAACCACATGAGGTCGAGACATGATGAACTGGTTTGA
- Protein Sequence
- MKAIKSPRSAKGTIGSQALKENLLKVRSQVTETREIDKHLQNIRNILFYSNATPIRKHTAHGYLCAFCPKYFTLPKDLKVHTLEKHDNETKSRFMKGCLIFNYAVKLDITGIQCNICDKDIDGLETLMDHLKSVHYKIIHTDIPNLIVPFKFEHDTFRCVLCPNMFDYFKMLQEHMHVHYNNYNCDVCNAPFLNKRTLKRHMSQHKQGDFSCRFCLKVFDTNIKKRCHEKFTHTHDQKRNKCAHCNEKFVSYAQRNNHMVKEHGAEALIFKCLACDKEYSTKESLTRHTKRDHLLERKHECQHCDMKFFRKKDLNIHVLKHTGVKSFSCDICLKAFARKDHLTQHLKIHSEDRQYRCAQCGLGCHTEIKLESHVSNILNTLSAPRPTRANDNKVDWTVTVAKKGSLKAIKEEILSVRPLKADKREIDKHLQNIRNILLFSNATPIRSYTGNGYLCGFCPEHFIMPSDLKIHSLQKHDNKMKSTFMRGYPLSSYVVKVDITGLKCEICGHDINGLEKLMSHLQSEHYKIMHTDIRNHILPFNLEGNTFKCVLCPKIYERFKLLQEHMNVHYNNYNCETCNSPFVNKRTLKSHMARHKQGEFSCSFCSKVFDTNGKKLCHEKFVHIGDHRRNKCPHCNEKFTTYAKKNEHMVKEHGANPHLLKCMACDKTFTRRDRLTRHTKRDHLLERKNECEHCDMKFYGKKELNMHMLKHTGEKQYRCDVCFKAFGRKHTLREHLRIHADDRRFKCEQCGQAFVQKCSWKNHMRSRHDELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01535152;
- 90% Identity
- -
- 80% Identity
- -