Basic Information

Insect: Ceramica pisi
Gene Symbol: ush
Assembly: GCA_963859965.1
Location: OY982531.1:23568433-23574120[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0087 0.99 11.3 0.2 1 20 130 149 130 151 0.94

2 9 0.00011 0.012 17.3 0.9 1 23 188 210 188 210 0.98

3 9 0.066 7.6 8.5 0.6 3 21 241 259 240 260 0.92

4 9 0.024 2.7 9.9 3.9 2 21 503 522 502 523 0.95

5 9 0.0083 0.95 11.3 0.2 3 20 552 569 550 571 0.91

6 9 2.1 2.4e+02 3.8 0.0 2 23 599 620 598 620 0.93

7 9 0.01 1.2 11.0 1.3 1 23 626 648 626 648 0.99

8 9 0.55 62 5.6 0.7 1 23 687 710 687 710 0.95

9 9 0.22 26 6.8 0.7 2 20 746 764 746 766 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0087	0.99	11.3	0.2	1	20	130	149	130	151	0.94
2	9	0.00011	0.012	17.3	0.9	1	23	188	210	188	210	0.98
3	9	0.066	7.6	8.5	0.6	3	21	241	259	240	260	0.92
4	9	0.024	2.7	9.9	3.9	2	21	503	522	502	523	0.95
5	9	0.0083	0.95	11.3	0.2	3	20	552	569	550	571	0.91
6	9	2.1	2.4e+02	3.8	0.0	2	23	599	620	598	620	0.93
7	9	0.01	1.2	11.0	1.3	1	23	626	648	626	648	0.99
8	9	0.55	62	5.6	0.7	1	23	687	710	687	710	0.95
9	9	0.22	26	6.8	0.7	2	20	746	764	746	766	0.92

Sequence Information

Coding Sequence: ATGTGTGCAACGATAATCTCGTCCGACTTTGTCACTCAACTCTTTGTTAGTGACTTTttagtaggtGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCAGAGGGCGAGCGCGCCGCGTCCAGCGGGGGCGCCTCGCCCGCATCAGGGGGCTCGCCCGCCGCGTCGCCACCGCGCCTGCGCCTCAACACCAGCCTGGCCACAGACCCCGCGCTGGCGCCGCAGGCCACAACACTGAAGCATGAGCCGCCCTCGCCGTCTCCGCCGCCGCCTCCTGCTGCGGTGCCACAAGCAAGAGACTACCTCGCCATAACGGCGGCGGCCTTCCCTGGTCTATTCCCTGCAACTGGCCCTCCCAGCTACATATGCAAGCCATGCGGAATTCGTTACTCATCTCTCAGTACATTGCAAGCACATCAAGAACACTACTGTTCAAACAGACTGCCAAAACCAGCGGAGCCGAATGCAACGGCCGACCCAGCTGTAGACGAGTCCAGCAGTGAGGCGAAGACCCCTCGCCCTGGTGGCAAGCAATATGCTTGCACCTACTGCTCGTATAGTGCGGATAAGAAAGTTAGCTTGAACCGGCACATGAGGATGCACTCCTCGTCCCCGGTGAGCAGCGGCACCCCGGCGCCGACGCCGACGTCTAACGGAGAAGTCACCGAAGGGCCTCCGGTGCAGGACCGCTACTGCGCCGATTGCGATATTCGCTTTAGCTCTATCAAGACTTACCGAGCACATAAACAACACTACTGCAGCACAAGACAAGTTGTGAAACAAGCGCTAGCTGCGGCTCGGGGCGGCTCGGCGACCTCAGGGTCAGCGCCCCCGTCGCCTGGAGCCACGCCTCCAGCACAAAACCAAAACCAGTACGCTCTCGCGTTACCGACAAATCCAATTCTCATCGTGCCCTACTCGTTATTACGGGGCGCCAGTACTCTACCAGGCACGACACTGCCTGATCCCGATACGCCATGCTTTCTTTTACCAAATGGAACATTCCAACCAATCAGTCGGGCACTATCAAACATGAATGCAGAAGGAAAAGAAAATGAGGTTTTAAAATCTGCGAATCGACCCCGAGAGCCATCAAGAGACGGTGGTGCGACACCTCTGGATCTCAGCGTACGACGGTCGCCGGAGTCTGTGGTGACTGATGAGCACGAAAAAGAGAATAGATTACGGTCAACGACTCCCGAGCAAATCGTATGCGCTCCATCACTCCCAGGATCTCCAGGTACGCCATCTCCCTCTCGGCGGTCTTCATCGCCAAGCGCAGAAAGTTCACCAAAGCGACGAAGATTAAACTCGAGGGGGCCGACTCCCAAACCTCCGAGTGTGCCGTCGCCCCCTGAAGAGAAATACACTCCAATAGTTCCTCCTGCGATTCTGCCTCCCGCTCTAGCACTGCGTCTCGCATCAGAACTGCCAGTTACAGCGGCATCTCCCCAAGTGCTTGTGAAGCAGGGAGTGTCGAAGTGCAAAGAGTGTAACATCGTGTTTTGTAAGTACGAGAACTACCGGATTCACAAGCGGCATTATTGCTCGGCGGGTGGTGGAGAGGAGCGCGCGAGTCCTGCTCCTCCCGAGCCTGGTCCACCGCCACAATACCGCCAGTTGATCTGCCTGGCGTGTGGGATCCACTTCAGTTCGCTGGACAACTTGACGACTCATCAATCGTTCTACTGCACTAAGCGGGAGACTCGGTCTCCTCGAAGCGTTCCTGAGGCTCCTCGGCCCACTTCTGGATCTGAGGGGGGGTGGAAGTGTCCCTGCTGCGACGTGGTGTCGccgacggcggcggcggcgcagcGTCACATGGACGCGCACGCCGGCGTGAAGGCGTTCCGCTGCACCATCTGCCGGTACCGAGGCAACACTCTGCGGGGCATGCGCACTCATATCCGTATGCACTTCAACAACAAGAAGCCTGCTGATTTACAGGAGGAGAGCTACATTGCATGCGTTCTCGAAGAGGACAGCCGTGAGGCGACCTCCCCAAGCCCAGCCGTGGGTGGAGAGCGCGTCCACCGCTGCGGCAGCTGCGCCTACACTTCCACTTACCGCGGCAACGTCGTCCGCCACGCACGACTCGTGCACGCTACCGACGAGCCAGAGGAAGAGCAAACATCACCCGTTCCTCCTCCCCCAACCACAGTCGACATCAAAAAGGAACCAGACACGGAACTCGAAGAAACTCCCAACTATTGCAAATCCTGTGACATATCTTTCAAGTATGTGAACACCTATAAGGCACACAAGCAATTTTATTGTACTGCTAACAATCAGGACGCGACGGCCAACAACAATGTACCTACCACCCCTGCTAGGGTTACTGACACGCCTGTGCTATGA
Protein Sequence: MCATIISSDFVTQLFVSDFLVGEDEEWGNESEAMPGEPRTPSSEGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATTLKHEPPSPSPPPPPAAVPQARDYLAITAAAFPGLFPATGPPSYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPAEPNATADPAVDESSSEAKTPRPGGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPREPSRDGGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIVPPAILPPALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPPTTVDIKKEPDTELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -