Cpis036735.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982554.1:4409120-4434580[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.2 23 7.0 0.9 1 23 212 235 212 235 0.96 2 13 0.04 4.5 9.2 0.1 1 23 327 350 327 350 0.91 3 13 0.00022 0.025 16.3 0.3 1 22 389 410 389 410 0.97 4 13 8.6 9.8e+02 1.8 0.7 1 12 708 719 708 727 0.71 5 13 0.097 11 8.0 2.4 1 23 740 762 740 762 0.97 6 13 0.0013 0.15 13.9 0.8 2 23 768 789 767 789 0.97 7 13 0.54 62 5.6 0.5 1 23 812 833 812 833 0.96 8 13 0.6 68 5.5 7.7 2 23 878 899 877 899 0.95 9 13 0.00019 0.022 16.5 0.5 2 23 915 936 914 936 0.96 10 13 6.1e-07 7e-05 24.3 2.7 1 23 942 964 942 964 0.99 11 13 7.7e-05 0.0088 17.7 0.3 2 23 970 991 969 991 0.96 12 13 0.86 98 5.0 4.7 2 23 998 1020 997 1020 0.95 13 13 0.00025 0.029 16.1 0.8 3 23 1059 1080 1058 1080 0.97
Sequence Information
- Coding Sequence
- ATGTCGGATACATCCAGGAAAAGGTCGAGAAAGTCGAAGTTGGTGCCACGAGAGTGTTCCGTAGACGAAGATGATCTTGAATTGCAGATACCGAAATCAAAACTATCAAGAAACATGAAACAGAAACCAAACAAGATAAAAAAACCGGAACCGTCTGCTTCAAAACCGGAGTCAACCGTATTAAAACCGGACCCAGACGCTGCGAAACCCGTAGAAATATATGACAAGAGtgtgcttaaaaaaataaacgctTCAGCTAGAGAAAGCTTTGAAGCAGAAGAAACGTTACCAAGGAAATTCGAAGTTAACATAGAAGTAGAATCTTGTGACAACCAAGACGATTTTGCTGAGAACCAAAACACTCCTGCAAGAAAAGTTAATTCACTCCTGAAAAAAGACGCAAATCCCACACCTATACCCTTAACCTTAGAGTTCATTCTCGAAGCAACTGACAATCTGAACTCCTCGACTAGCATTGCTGATAGAATGCTAAATGCTCACGTCAGGAACAGCATAGGTTACGAGCAACGGCAAAAATTGCTGCAGAGCTTACAGGAGAATCAAATTCAAGCGTGTCTAGAGGAATGGAGGACGTGGCAGTCACGTAGCTTCCATAGACAAGATCCTTTATTTTACAAATGCTACGTCTGTACGAGATCGTACTGGTATTTAGCGGAATTCCGCAACCACTTATCTGTAAGTCACCCAGATGATGAACTTTTAAATATATCCCTGGAGAAGTACGAGATGCATGAAGCGAATTTGATAGCCTATCACAAAAGGCTTGTGGTTATCAAAGATATATACACGCATGGATTGTGTTACCGCTGCGGAAGGGATTATTCCGCCCATGAATTATCGTTTAGGTTCCAAGAGAAATTTTACAGGCAAGAGGGTTGCTCCAAGCACTTTACTTGCTGTACTGATCTGAGAGACCATTTCCCATCGTGTGCCATTTGTAACGTACAAGGGAAGCCATATAAATGTGATATCTGTAACTCCAGATTTGATACTGATGATGAACTGCTCGGTCATCTGGTTTTGTCACATTCTGTCCGGTCAGATGTACCTATCATGTCCCGTTACGTGAACTGTAAAGTTTGTTTGGAGCGCTATGAGTGTAAATATCTGCACTTCTGTGTAGGTAAAGTTTTAGGTCCTAACTTCGAGTGCCCGCACTGTTCAATAAGCTTCTTTAATGCGATTACGTTAGAGTCTCATATGAAAACTGCAGGAACACCGTACAAATGTGAGATATGCGGAGATGTGATGCCATTCAGCTGTATGAAGTATGATCATATGTTATTGCACACTGATAATTTTATGGTCGTTAAGAAGTGCATGATTTGCGATGggttaaatgtttttgtgaGCGAAGAGGATGCAAAAGCTCATTGGACCATGAAACATAAAGTCATGGATTTGAGGCGAAAGATTTATTTTCCTAAAGTGCTAGTACCATGGTCCTGCATATATCATAGATTAGCTGAAATCGAGTTAAAAGAACAGGAATCGTTGCTGGAGGCTCAAGAATCGGTATCAGAAGTTCAAGAAGACCAGGAATCGGGGGCAGAAGACCAGCAATGGGGGGCagaagaaaatatttgtaaagtgGAACAAGAATCCGACATGGATGAAAAAGAATCGTTACTGGATATAGAAGAAGATACGCTTTCAGCATCTTTACAAAAGtctttacaagaaaagttagaTAATGCAGAGAGAGAATTTGCAAGTGGTAGTGTTGTAGTGAAAGAAGAACCAGTAGACCTAGAAAGCCCAAGACTTGTAATCAAGGAAGAACCATTAGATATAGTTGACAACCAAATGTTTGAACACGAACACCAAGCAGACACTATTAAAAACCAACAGAAAAACTTCGAAAACCAAATCACAGTTAAACAAGAacttgaagaagaagaagaattagATGAATACGAAGAAGATCTTATTAAACTCAACTTCAATATAGAAGATTATATGGTGAAAGAAGAGACAATACAGTTAGACAGCGAAGTGACAGTTAGCCAAGATTCTGACACAGAAGAATCACTAACAAAAGATTCAATGCTAGAACCAGAGATCATAATTACAGGCGAACATAGGAAGACCAGAAAACTTTACCGATGTACCACGTGTGGTTTTCAAGCAAAGCATAGAGAATACAGAAATCATATAGAATTCGATTGTACCAAGAACCCCTCACAATATAGAAGTTATAAATGCACGAAATGTGACATAGAATTTGGCTCtatgaaaaagtttttaactCACTTTGAGAAACATGGATATACCCCACTTTCCTGCCCAGAATGCTTAAAACAGTTCAAGACTTTTACATCTTTAGGACAGCATCTACAAACTCATATTAAAAAGAATTTCATCAGAGTCAAACTCATAACTTACGCCGGTGATGAGACAGCGAGGCCGGATTTTCAATGTCAGAAATGCTCTGAGAAGGTAGATTCGGCGGATTTCTTTGATCATTGGGAGACTCATATTAAGGCGAAACCATGTCATCCTGTTAAAGTGATTTCTGGGCCGAATCCATGGGCGAAACAACAAATGCATGGGCAACTGCATGAGAAAATCATAAAAGAGTGCATAGCCCACCTAAATATTCAGCCAAAAGAATGCAACCACTGCCATCGCATGTTCCAACGTTCAAACGAGTGCAAGCGACATATTATAGAACATTTACTGGTCGACGCTTACAACCAGAAACATATTTTCAAAGATCTTAGATGCCAGatctGTGGTAGCGGGTTTCCAAATTCAGACAAATACAAGCAACACATGCGAGATCACGCGTCGTTGCCTGTGTACAAATGTGAATTATGTGACCGCACTTTTAGTGATTCCAGTAACTtcaccaaacataaaaaagtgcATAATTTGAAAGTCGTAGTCTGTGATCTGTGCGGGAAGAAATTCCAGTCGAAAATGTCTTTGGAAAAACATATTGAGCAACATCAAAACTCGACGCCAATAGTGTGCAAAATTTGCAAAAAACTCTTCTACTTTGATACATCATACCGCCGGCACTTCAAGTCTTGCCACGAGAAACCAGCCACATTGTTCCGGTGTATTATCTGTGGCGAGCGTTTTGACTGTTTAAAAGACAAATGGGACCATTTATGGGAAGTGCACAAGGAGCGAAAGCATAAAGCTGACTGTCCTATATGCCATCAGTCATTTAGAAAGTATTCTGATGTTCGCGCACATGCAAAAACAGTCCATATGACAGCTATATCAGTTTTGAGCGTCAAAAGGGCCAAAGAATTGGCTTCGAAAAAACGCGATGTTAGTATCTTGAATAAATGTATAAGAAATTCCGAAGCGCGGATTACAGTTGGACGAACATCTGAGACACTGGTTGTCTATGATTCTGACTGA
- Protein Sequence
- MSDTSRKRSRKSKLVPRECSVDEDDLELQIPKSKLSRNMKQKPNKIKKPEPSASKPESTVLKPDPDAAKPVEIYDKSVLKKINASARESFEAEETLPRKFEVNIEVESCDNQDDFAENQNTPARKVNSLLKKDANPTPIPLTLEFILEATDNLNSSTSIADRMLNAHVRNSIGYEQRQKLLQSLQENQIQACLEEWRTWQSRSFHRQDPLFYKCYVCTRSYWYLAEFRNHLSVSHPDDELLNISLEKYEMHEANLIAYHKRLVVIKDIYTHGLCYRCGRDYSAHELSFRFQEKFYRQEGCSKHFTCCTDLRDHFPSCAICNVQGKPYKCDICNSRFDTDDELLGHLVLSHSVRSDVPIMSRYVNCKVCLERYECKYLHFCVGKVLGPNFECPHCSISFFNAITLESHMKTAGTPYKCEICGDVMPFSCMKYDHMLLHTDNFMVVKKCMICDGLNVFVSEEDAKAHWTMKHKVMDLRRKIYFPKVLVPWSCIYHRLAEIELKEQESLLEAQESVSEVQEDQESGAEDQQWGAEENICKVEQESDMDEKESLLDIEEDTLSASLQKSLQEKLDNAEREFASGSVVVKEEPVDLESPRLVIKEEPLDIVDNQMFEHEHQADTIKNQQKNFENQITVKQELEEEEELDEYEEDLIKLNFNIEDYMVKEETIQLDSEVTVSQDSDTEESLTKDSMLEPEIIITGEHRKTRKLYRCTTCGFQAKHREYRNHIEFDCTKNPSQYRSYKCTKCDIEFGSMKKFLTHFEKHGYTPLSCPECLKQFKTFTSLGQHLQTHIKKNFIRVKLITYAGDETARPDFQCQKCSEKVDSADFFDHWETHIKAKPCHPVKVISGPNPWAKQQMHGQLHEKIIKECIAHLNIQPKECNHCHRMFQRSNECKRHIIEHLLVDAYNQKHIFKDLRCQICGSGFPNSDKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVVVCDLCGKKFQSKMSLEKHIEQHQNSTPIVCKICKKLFYFDTSYRRHFKSCHEKPATLFRCIICGERFDCLKDKWDHLWEVHKERKHKADCPICHQSFRKYSDVRAHAKTVHMTAISVLSVKRAKELASKKRDVSILNKCIRNSEARITVGRTSETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -