Cpis038034.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982555.1:3840354-3892315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 17 7.4 1.1 2 21 86 105 85 106 0.93 2 17 0.042 4.8 9.1 3.8 2 23 169 190 168 190 0.95 3 17 0.42 48 6.0 1.1 1 23 202 226 202 226 0.91 4 17 0.00015 0.018 16.8 0.3 2 23 233 256 232 256 0.97 5 17 0.26 30 6.6 0.4 1 23 262 284 262 284 0.93 6 17 0.004 0.46 12.3 2.9 1 23 290 312 290 312 0.98 7 17 7.4 8.4e+02 2.1 0.1 2 14 323 335 323 338 0.85 8 17 0.79 91 5.1 0.3 2 20 348 366 348 368 0.90 9 17 0.046 5.3 9.0 0.2 1 23 447 469 447 469 0.97 10 17 2.4 2.8e+02 3.6 7.2 1 23 476 498 476 498 0.95 11 17 0.0016 0.19 13.6 1.8 1 23 548 571 548 571 0.95 12 17 0.00027 0.031 16.0 0.7 1 23 578 601 578 601 0.98 13 17 0.0045 0.52 12.2 0.2 2 23 624 646 623 646 0.96 14 17 0.0031 0.35 12.7 3.0 3 23 672 693 671 693 0.93 15 17 0.00018 0.02 16.6 1.3 1 23 718 740 718 740 0.97 16 17 0.94 1.1e+02 4.9 0.1 1 12 746 757 746 759 0.91 17 17 0.00045 0.052 15.3 0.7 3 23 912 933 910 933 0.95
Sequence Information
- Coding Sequence
- ATGGAACTCCGACTAAAGCGGCATCACCTATTGCGAATCGCACTCGAAGCTCTAGCAAAAAGGGAGACGGCGATGGAAAAGACGGAGCCACCCATAATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGCGAGGATGAGATCTGGATCGTCCAGACTGCTGATGCTGAAGCTACTCAGGAGCTACAGAAACTACTGTGTAGTGCGACGGTTAAAGAAGGTGGACAAGATGGCGCATCCGAAAAGACCTCCAAATGTTTTAATTGCAGCCAAATCTTCCCGAACGCGGATGGCTTGTCAAACCACCGCTGCAGAAGACGCAACCGCAAGCGGAAATCCAAAGACTTGGGCAACCTCATATGTATACCTACCGAAGAAGATTTTCTGAAGAGGGCTCAGGGTCGTCCCCGACCAGCGGATTCGTCCGCAGACAATGATTTTCTTGTTATGCATCCCCGAAAACGCCGCAGCCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGTAACGAATCCTTCACGTCTAAAGTTCGACTCAAGTTTCATATGCAATTCCACGAAACCTCAAACAAAGCGCGCACAGACGGGCAATACTCCTGTTCTGAGTGCGACGATGCCACCTTCTCCACGGAGACGGAACTGTTCGACCACGTGCACTTCCAACACGACAAGCAAAAACGGTGGCAGTGTCCCGTCGAGGGTTGCGGGAAGACTTTCTTCCTCAGGGCAACGCTTACAAAGCACAGTCGCACGCACACAGACACGCGTAGATACGTATGTGTTACATGCAACAAGAGGTTCCTGGACAAACAGACGCTGGATGAGCATGGAGTCACGCATTTACAGATCAAACCCTTCCAATGTCATATCTGCCTGAAGCAGCTGACCCGTCGCTCTCGTCTGCGCATGCATGTGCGTGCGCACGAAGAGGAGCTGGCGCCGCGGCTCGTGCGCGTCTGTGCGGTCTGCACGAGGGCGTTCAGAGACCATGTGCATGCACAGGAGGAGCTGGCGCCGCGGCTCGTGCGCGTCTGTGCGGTCTGCACGAGGGCGTTCAGAGACCATGTGCATGCACAGGAGCATGCGTCAAAATCGATAGAATGCATCGAAGCTTTCGCAAACGAGTTGAAAGAAGAGGCTGAAGAAGTGTCAGTACAGTTATCTCCTACCAGTGGACTCGTGAGACATACTGTGCAGATTGTTGAATCCCCGAAGCTATCAAAGCCTATAAAGCGGCAAGTATCAAACGAGATGGGCGAGCCGCTGCTGTCTCAGCTGGCGGATGAAGCGCGCGCTCTGATACGGGTCGTAGAGATCGAAAAGGCGTTCCGTTGCGAGTACTGCGAAGATGTGTTTTACCTGGAAAGCGGTCTGAACACGCACCGCGCGATACACAAAGGAGTCAAGAATCCCTTCACCTGTCACATCTGTAAAGTTAGCTTCGCTACTTATTCCAGATGCACTACCCACAAAACAACTCACGGCTTCTACAAACGCTCACTAGCCGACGCTAAAAAGCAAGCCGACGCCAAGAAACAAGCCGATGGACCGCCACAAGCCGACACCGATAGCTCTGCGCGCTCAGCCGCTGGCATACTCGGATATGGCGACTTCCCCGTCGTCAAACACTTCCTGTGTGAGGACTGCGGGCGCTCATACCTGCACTGGACGTACCTACAAGTACATCGACGTATGAAGCACGCGAACGAAAACTTTCTGTACAAGTGTAACCAGTGCGAGCTTACATTTCCTAACAGTTGGAGCCTGGCCTACCATCGGAAGAAAGTGCACGGTAAGAACGGAGCCGACGACCCTGGGACAGCTGCCAATAAGACCAATAGGGAAGATTATAGgATACCGTGTCGGGATTGTGATGAAGTGCTGCCGAACAAAACAGCTTTATACAAGCATCGTAAGAAGGAACACAGCGATGGAACTACACGGTCTTATACTAAACCAGGCATGTACCCGAACGCCGAGTCCGAGTGTGCGGGCGGGCCGTGTCCTCACTGCCCCGCCACGTTCACGCACACCACCGACCTGCACAAACATGTCAAAGATATCCACGGCAAAGACGAAGACTCGTGCGCATCCTGCAACAAGACGTCCGCCTCAGACGCGTCCTGTCCGCGGCGCCCGCACGTGTGCCCCGTATGCGGGCACGCCTTCCGCACGCTGTCCATGCGCAACGAACACCTGCGCGTGCACACCGGCGAGCGACCCTTCCCCTGCGACGTGTGCGGAGTGGCCTTCAGGAGAATGGATCCTACTGTCTTAGAAGGTCTTCTCAAAGCGATCAGAGATGCTGTTTCTGGCCGTCGCCATGCTGATGACGACGTGGCACTCCCGGTCTTCGACCCAGCAACTAGTGACAGCGGTGCGGAAGGCTGGTGTAAAAGCATCGAGGAGCTGTCAAAAGAATTTGGATGGAGCAGTATCACAACGGTCGCAAGAGCTGATTGTAACGCTATTAAATCAACAATGAATAAAAAAGATTTATCACCACGAGTAGCCCGCTGGTGGACATATATGCAGGATTTCCAATTTGAAATTATCTACAAGAAAGGACAATATATAAGCCATGTCGATTTCCTCAGTCGCAATCCTGTTGAGGTCCCCATCACTGTTGATAGCACAGTCAATTTAATAAATGACCCGCAATCTTGgtcCACAGCTATGCGCAATCACCGCCTGATACACACGGGGGTGCGCGCCTGGGCGTGTGGGCGCTGCCCCAAGCGCTTCCGTATTCGCTCCGACCTGCGCACGCATCTGCGCCTCAAGCATCCTGCTACTATTGTAGTTGTAGAGGTGGAAGGCCTGAACCCGACGTCTGATGAAGTACTGAAGGCGCTCGATGCACAAAACGTTCCACACGATAAGCTTATAGATATCACCAAGATGTCTTTTGTCAAGGGCTCGACGAGCGTGATCCCGACGTGCGCGCGCGCGCTGTCCGCGCTCAACAACGTGCCGCGCACGCACGTGGCCTGCCTCAAGCCCTCTCCCGCACTGGAAGAGTTGCCGGCGCGGCGCGGTCGCGGCATCGCCAAGAACCCGCGCCGCCCCAAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGATGGCGCAGAGATCCTGCAGCGCGGGGACCTGGAGCCGCCGCACACTGCGGACTACCCCATCGACGGCGCAGAGGTGACGCTTCATTTATTTCATCATGATACCAGGCTGCAGACGTCCAGTGCTGCAGACGGCCGAACCGCGCGTGTGGCCGCCTGTGTGAGAGCATCCgacggctacccgcgaccctgcTAA
- Protein Sequence
- MELRLKRHHLLRIALEALAKRETAMEKTEPPIIKTEVKQECLDSSEDEIWIVQTADAEATQELQKLLCSATVKEGGQDGASEKTSKCFNCSQIFPNADGLSNHRCRRRNRKRKSKDLGNLICIPTEEDFLKRAQGRPRPADSSADNDFLVMHPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNKARTDGQYSCSECDDATFSTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCNKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHVHAQEELAPRLVRVCAVCTRAFRDHVHAQEHASKSIECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNEMGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADAKKQADGPPQADTDSSARSAAGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKNGADDPGTAANKTNREDYRIPCRDCDEVLPNKTALYKHRKKEHSDGTTRSYTKPGMYPNAESECAGGPCPHCPATFTHTTDLHKHVKDIHGKDEDSCASCNKTSASDASCPRRPHVCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRMDPTVLEGLLKAIRDAVSGRRHADDDVALPVFDPATSDSGAEGWCKSIEELSKEFGWSSITTVARADCNAIKSTMNKKDLSPRVARWWTYMQDFQFEIIYKKGQYISHVDFLSRNPVEVPITVDSTVNLINDPQSWSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEVEGLNPTSDEVLKALDAQNVPHDKLIDITKMSFVKGSTSVIPTCARALSALNNVPRTHVACLKPSPALEELPARRGRGIAKNPRRPKILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEILQRGDLEPPHTADYPIDGAEVTLHLFHHDTRLQTSSAADGRTARVAACVRASDGYPRPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -