Cpis027999.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982545.1:22297307-22299445[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.98 1.1e+02 4.8 0.1 2 23 34 54 34 54 0.93 2 13 8.5e-06 0.00097 20.7 1.2 1 23 60 83 60 83 0.95 3 13 8.2e-07 9.4e-05 23.9 3.1 1 23 89 111 89 111 0.96 4 13 3e-05 0.0034 19.0 0.1 1 23 117 139 117 139 0.98 5 13 1.4e-05 0.0016 20.0 0.1 3 23 146 166 144 166 0.96 6 13 1.1 1.2e+02 4.7 8.7 5 23 175 193 172 194 0.93 7 13 0.4 46 6.0 1.3 1 23 255 276 255 276 0.94 8 13 0.089 10 8.1 1.6 2 23 476 498 476 498 0.96 9 13 2.4e-05 0.0027 19.3 3.4 1 23 504 526 504 526 0.97 10 13 3.3e-05 0.0038 18.9 1.6 1 23 532 554 532 554 0.98 11 13 0.019 2.2 10.2 0.7 2 23 561 582 560 582 0.96 12 13 0.00018 0.021 16.5 0.2 1 23 588 610 588 610 0.94 13 13 0.00064 0.073 14.8 0.4 1 23 615 638 615 638 0.95
Sequence Information
- Coding Sequence
- ATGCCAGTAGCAGAAAAAGTGCAAGAAGATGACAAAACGAAAGTTGAGATCGTCGAGAAACCGGAGTTCACTATAGGCGAGAATGGGAAACGATACGCGAAGTGTGGCGTGTGTCAGAAGAGCGTGTCGGTGGGCGCGTGGAGGCGGCACGCGCGCGCGCACCGCGGGGAGCGGCGCCACAGCTGTCACACCTGCGGCCTGGCCTTCAACGACAGCGGCAACCTGGCGCGCCACACGCGCGCGGTGCACGCCCGGCAGCGCCCGCACGCCTGCCCCACCTGCCCGAAAACATTCTCACGGAAATCTCACTTGGAAGACCACGTGAAGTCTCACTCGGAGAGTCGTACGTTCGTGTGTGACGTGTGCGGGAAGGGCTCCAAGTCGAGCGCGGCGCTGCGCATGCACGCGCGCACgcacgccgcgcgccgcctgGCCTGCCCGCAGTGCGGCGCGCGCTTCAAGCGGCGCGCCGAGCTGCGCGCGCACCTGACCGTGCACACCGGCGAGCGGCCGCACCGCTGCCACTGCGGCCACACCTTCCGCCTGCGCACTCAGCTCACGGCGCACGCCCGACTGCACCACAAGACGAGGGATGACGAAATACAACATTCAAATAATGATAGTAATATACTAAGGCACTCGCTGGCGGAGTCCCGCGCGTGCGCGTACTGCCCCCCGGCGCTCCCGGcgctccccgcgccccccgcgccccccgcgcacTCGTACAGGCAGCACCTGGTGCTGGTGCACGGCGACCTGGTGTTCCACTGCGAGGTGTGCGACCTGTTCGTGGACCGCAAGGACTTCATAGTGCACATGTCCTACCACACGCGGACCTACGCCGCCGAGGAACGGCTCCGGAAGATGCTCCGGAAGAAGAAAAAACCTGTCAACGCGCAGCCCAGCCCCCCAGCACAGCCCAGCCCCCCCGCTGCCACGCCCCCCGCTCCAGCCCCCGCGCCTGCTCCCCAGGCAGCACCCAAAACAGAAACCAAACCACTCATTGTTAAAATCAAAGCCAAGAAGCCAGCAGTGACCACTAAAACCAAAACGAATGTCCAAGTGAATGAGTTCTCAGACCACAGCGATATGGACGAGTTCGGACCTCTGCCCGAGTCCGTGTTCGAAGCTATCGAGGACACACAAGACGGCCAGCATTTAGAAGATAATACTAATCAAACGCCCAAGAATGAGCAACTCAGTGACGAATCCAATAAATCTTCCCTaccagaaaataaaaattcaagtaATCCTGACCACTGtttggaaaataataatagctgtGCCCAAAGTATGAATGTAGTCATTAAAAATACGAGTAATAATACAAGTAACAATCTTGTTTCGCCAGCCGCTAAATCAGCCCCAAAAACTGCCGATAGTCACCAGACTGGGTTGGGGAAGAGAAACCGGAACAAGTTACGCAAATGTCCCCTCTGTCCTAAAGAGTACCAGGCGTCTTCCAGCTACTTCTATCACCTGAAACACACCCACAAAAGCAGCAAGGAGCACGAATGTGAAGTGTGCGGCCGGAAGTTCGGCACCAGATCCTGCCTGACGCAACACATGACCGTGCACACCGGCCAGTGCGAGTTCGAGTGCAAGCAGTGTCAGAAGCGGTTCAGGTCCAAGGCGGGGCTGTACATCCACGAGCAGACGCACGGCGGCACCAAGTCGTGGACGTGCAGCCAGTGCCCGGCGGCCTTCCGCTGGAAGACGCACCTGCTGCGGCACGCGCTGCGGCACGCGGGGGAGCGCCGGCACGCCTGCGCCGCGTGCGGCCGCGCCTTCAGCGTGCGCGCCGACCTGCTGCGACACGCGCGCACGCACTCTGCGGGCAGCTTCGCCTGCGACAAGTGCGCCCAGAAGTTCGCTCAGCAGCGCTACTTAACAGTGCACATCGCGAAGCAGCACAAGGCAAATGTTAGGAAGTCTAAGTAA
- Protein Sequence
- MPVAEKVQEDDKTKVEIVEKPEFTIGENGKRYAKCGVCQKSVSVGAWRRHARAHRGERRHSCHTCGLAFNDSGNLARHTRAVHARQRPHACPTCPKTFSRKSHLEDHVKSHSESRTFVCDVCGKGSKSSAALRMHARTHAARRLACPQCGARFKRRAELRAHLTVHTGERPHRCHCGHTFRLRTQLTAHARLHHKTRDDEIQHSNNDSNILRHSLAESRACAYCPPALPALPAPPAPPAHSYRQHLVLVHGDLVFHCEVCDLFVDRKDFIVHMSYHTRTYAAEERLRKMLRKKKKPVNAQPSPPAQPSPPAATPPAPAPAPAPQAAPKTETKPLIVKIKAKKPAVTTKTKTNVQVNEFSDHSDMDEFGPLPESVFEAIEDTQDGQHLEDNTNQTPKNEQLSDESNKSSLPENKNSSNPDHCLENNNSCAQSMNVVIKNTSNNTSNNLVSPAAKSAPKTADSHQTGLGKRNRNKLRKCPLCPKEYQASSSYFYHLKHTHKSSKEHECEVCGRKFGTRSCLTQHMTVHTGQCEFECKQCQKRFRSKAGLYIHEQTHGGTKSWTCSQCPAAFRWKTHLLRHALRHAGERRHACAACGRAFSVRADLLRHARTHSAGSFACDKCAQKFAQQRYLTVHIAKQHKANVRKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -