Cpis008867.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982531.1:3895202-3913481[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00081 0.092 14.5 2.4 1 22 294 315 294 318 0.92 2 12 0.0038 0.43 12.4 3.6 2 23 446 468 445 468 0.94 3 12 0.0033 0.38 12.6 0.0 1 23 474 496 474 496 0.95 4 12 0.027 3.1 9.7 0.1 1 23 508 531 508 531 0.89 5 12 2.7e-07 3.1e-05 25.4 3.5 1 23 536 558 536 558 0.98 6 12 0.00054 0.062 15.1 1.0 1 23 564 586 564 586 0.94 7 12 0.00013 0.015 17.0 4.9 1 23 592 614 592 614 0.98 8 12 1.3e-07 1.5e-05 26.4 0.4 1 23 620 642 620 642 0.98 9 12 0.0047 0.54 12.1 3.0 1 23 648 670 648 670 0.98 10 12 4.3e-05 0.0049 18.5 0.3 1 22 676 697 676 697 0.96 11 12 7.7e-05 0.0088 17.7 0.8 1 23 704 726 704 726 0.98 12 12 6.9e-06 0.00079 21.0 3.6 1 23 732 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGACTATGTGGAGAAGAAAATGATAGTGGAAATTTGTTATATTCGTGTgaagaaaataatcaaaacttaagtgaagtgaTTAACACATATTTGCCAATCAAGGTTGCTGATGATGGACAGTTGCCTCGTACCATTTGTCCAGGATGCACCATACAGCTGGAAGCCACCGTAGAATTCCTAACATTGATTATAAACGGACAAAAAGTAATTCGTGAACTGCATCTCAGAGAGAAAGAATACAACAAGAGAACTATTCTAGACACCCCTACGGAACAAGAGATTGTAACAGATAAGATCATTTATGAAGTTAATACAAGTGATGGGGTCTACCAAGTGGAACACCCAATTTCATTACAAGTTGCGGGTCTTGAAAAGCCAAAACGTAAGCGCGGTAGACCTCCGAAAAAGCCTAAAACTCCAGAAGAGATAGCTAGAGAAGCTGCTGCAAAAGAGCAGGAGACAAAGCATGTTAAAAAGCAAGATAGAGAATATGAGCCTGGTTCAGGAAAACGGAGGAGGAAAACTCCAACTCGTTTCCGAGAAGCTGTTCAGGGTAAAGAGCTTGAGAGGATATTCAAAGAAGAAGGAGTAATAGATGGAGAAGAAAGTGAACCTGACGTGAAGACAGAACAACACTTTGAATTAAAACCACCTGTGCCTAAAGAACCGGAAGTTATTGGTCATCTAGAGGATTCTGGAGAACTTGTTGTTGTGGTCAAGGGCAAGGGCCGTGGGCGACCTAAAGGTCCTATGACTCCGACCCGCAAAGAATGTGCAATCTGTGGCATGGAGTTCACATGCACTGGTCGATACATGTCGCACGTGGCCCAGCATGGGCCAGTACTGTACCAGTGTGGGCAGTGCTCCGAGACTTTCACTACTCGCTTACACTTCAACAACCATCAGAAGGAGCTCGGACACACTGGACAGAATATTATACCATGTAAGAAGAATGTTGAGAGAACTAGAGCTAAGAAAAGCGATAAACCAAGAACTGAAACAATAGTGATACCAGATCACCCTCAGCCCGAAACGCCGAAGTCTGATAATGTACAAATATTAGAAAATGTGATATTGCCTATTACAACTTCCTTGCCAGATTTAAATCCTCAACCAATAGTTATTGACAATGATGTGAATGGTCCTGAGTTCCTGAAGACGCAGAGCCCTACGGCTGATGTTACGTCCAGTCCTAGCGTTGATAGTGTTGTTAAAATTGTTGATTCGACCACAGATGCCGCGACAGAGAAGTCTGACGAAACAGAACAAGTAGAACTATCTCCATCTGGTAAACCAAGACTGAAGTGTAACCACTGCGAGAAGACTTTCAGTAGCAAGCAAAGCAAGTCCTTACATATTAAGGCCACTCACCAAGGCGAACGTCCATACGTGTGCGGCGAGTGCGGCGCGCGGTTCGCGTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGGCGCCGCGGCGGCGGCAGCACTGCTAAAGGCTACGCGTGCGACTTGTGTGGGAAGGTGCTGAACCACCCGTCGTCCGTGGTGTACCACAAGGAGGCGGAGCACGCGGGGCAGCGCTACGTGTGCAACAAGTGCGGCAAGTCCTTCAAGCACAAGCAGCTGCTGCAGCGTCACCAGCTCGTGCACTCGCAGGACAGGCCCTTCAACTGTAAGCTATGCAGCGCATCGTTCAAGACGAAGGCGAACCTACTGAACCACTCGCTGCTGCACACGGGCGTCAAGAAGTTCTCGTGTGAGATCTGCAAGCACAAGTTCGCGCACAAGACCAGCCTCACGCTGCATATGAGGTGGCATACTGGTCAGAAGCCGTACTCGTGCAACGTGTGCGGCAAGAGCTTCAGTCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCCTTCCAGTGCGCGCTGTGCCCGCGCCGCTTCACCACGTCCAGCCAGCACCGCCTGCACGCGCGCCGACACAACCCTGACCGGCCCTTCACGTGTGCGCACTGTGGGAAGAGGTTCGTGTCGCGCAGCTCGTGGGCGGCGCACGTGCGGCGCGAGGGCGGCGGCCGCACGCACCGCTGCGGCGAGTGCGGCCGCACGTTCGCGGAGCGCTGGCCGCTGCTCAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGCCCGCACTGTCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTCCACAAACAGATCAGCTTACTGGCGAACGCGAACCAACAAGCAGTTCCGTCCCCCATCCCTCTGAAGCTGGAGCAGCCGGAGTCGCCTCTCATACAGCTGGAGCAGAGCGCGGCCCTCCCGCAGGCGCCGCCCGCCGCGGGGGAcgagctggaggagagagtcATCTACGTCACGTATGACGTAGATGACGCGGAGCCGCCCGCTTTCCACATACTGGACCCTGAACAAGCAGTGTCCCTAGACGAGGACAAGGTGCTAACAACATGCGAACTGTACTCGGGCCCCTCGCTCCTGGTGCCGCAGCCTGAGTACGAGCAGTTAGAGCTGGAACACGAGCAGCTAGAGCTGCAGCACGAGCAGTTGGAGCAGGAGGAACTGCAGCAGCTGCCCGAGGAGATGGTGCTGGAGGGACATGACCAGAATATGCCTGTAACGGATGAACAGGGTAATCCACTTCACTTCACCATGCAGGACGGCACACGACTCGCCATCACGTCGGCCGATGGGAAGTCTTTACAGGTGATAACTCATGATGGGCAAACAATTCCCGTCGAAATTAACGGATACGCAGATGAGGAGGAGGTGGACAATCCCGACACAATAGTTCACCAACTGAACCTTCAGAAGAGCATCGACTCCAACGTGTCATCGCCAGTCACCCACTACTTTACTATCGTTTAA
- Protein Sequence
- MEVVLYNSNVCRLCGEENDSGNLLYSCEENNQNLSEVINTYLPIKVADDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYNKRTILDTPTEQEIVTDKIIYEVNTSDGVYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEEIAREAAAKEQETKHVKKQDREYEPGSGKRRRKTPTRFREAVQGKELERIFKEEGVIDGEESEPDVKTEQHFELKPPVPKEPEVIGHLEDSGELVVVVKGKGRGRPKGPMTPTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGQCSETFTTRLHFNNHQKELGHTGQNIIPCKKNVERTRAKKSDKPRTETIVIPDHPQPETPKSDNVQILENVILPITTSLPDLNPQPIVIDNDVNGPEFLKTQSPTADVTSSPSVDSVVKIVDSTTDAATEKSDETEQVELSPSGKPRLKCNHCEKTFSSKQSKSLHIKATHQGERPYVCGECGARFAYPRSLALHAVSHRRRGGGSTAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPFNCKLCSASFKTKANLLNHSLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCALCPRRFTTSSQHRLHARRHNPDRPFTCAHCGKRFVSRSSWAAHVRREGGGRTHRCGECGRTFAERWPLLKHLRKHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANANQQAVPSPIPLKLEQPESPLIQLEQSAALPQAPPAAGDELEERVIYVTYDVDDAEPPAFHILDPEQAVSLDEDKVLTTCELYSGPSLLVPQPEYEQLELEHEQLELQHEQLEQEELQQLPEEMVLEGHDQNMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSIDSNVSSPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746034;
- 90% Identity
- iTF_00851026; iTF_00852047;
- 80% Identity
- -