Cpis003778.1
Basic Information
- Insect
- Ceramica pisi
- Gene Symbol
- -
- Assembly
- GCA_963859965.1
- Location
- OY982528.1:8434859-8435446[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 1.2e-06 29.4 0.0 2 40 21 60 20 62 0.94
Sequence Information
- Coding Sequence
- atgaataatactagaaaaaaaagaagaatgtTAGGATCGCGAGCCTACAGAAATTATTCAGAGGATATGTTGAAATTAGCTGTTGATATGGTAGAAAATAACAGGATGTCAAGTCGGGAGGCAGAAAAGAGATTCGGAATTCCTCGACGGACGATAttgaacaaagttaaaaaagtCCACTTGAAACCAGCTGGAGGACAGAAGAAACTCACTGAAGACGAGGAAGAAAAACTGGCAAACGTATTGTTAGCTTCAGCAGATTACGGCAGCCCCATGACAAAATTGGATGTAAAAATGTTAATCTATaagtatttagaaaaaaaatcacgaACTGATTTGTTCGATGGCAAATTACCAAGTGATACGTGGGTGGAAGGATTTTTAAACAGACATCGTTCGAAACTGACCATCAGATCGactcaaaatattataaaggtaCGGGCAGAGAAAGGATTAGAAGAAATGGAGCAATTTTATACTAATTTAAGTGTAACCCTAAATGGTGTACCACCGACGAACATACTGAACTATGACGAGACTAACTTGTCCGACAATCCAGATTCCAGGCACTTCAAAATGTGTTTTTAG
- Protein Sequence
- MNNTRKKRRMLGSRAYRNYSEDMLKLAVDMVENNRMSSREAEKRFGIPRRTILNKVKKVHLKPAGGQKKLTEDEEEKLANVLLASADYGSPMTKLDVKMLIYKYLEKKSRTDLFDGKLPSDTWVEGFLNRHRSKLTIRSTQNIIKVRAEKGLEEMEQFYTNLSVTLNGVPPTNILNYDETNLSDNPDSRHFKMCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357413; iTF_01026053; iTF_01312165;
- 90% Identity
- iTF_01026053;
- 80% Identity
- -