Cdis020009.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756379.1:4681472-4684993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.02 0.92 10.5 1.3 1 23 169 191 169 191 0.98 2 19 0.21 9.3 7.3 2.5 3 23 219 239 218 239 0.98 3 19 2.2e-05 0.001 19.8 0.6 1 23 491 513 491 513 0.99 4 19 0.93 42 5.3 0.6 1 23 525 548 525 548 0.92 5 19 1.2 55 4.9 0.5 1 23 572 594 572 594 0.90 6 19 0.18 8.2 7.5 3.1 1 23 605 628 605 628 0.94 7 19 0.93 42 5.3 0.6 1 23 666 689 666 689 0.92 8 19 0.0064 0.29 12.1 3.1 1 23 713 735 713 735 0.98 9 19 0.93 42 5.3 0.6 1 23 747 770 747 770 0.92 10 19 1.2 55 4.9 0.5 1 23 794 816 794 816 0.90 11 19 0.93 42 5.3 0.6 1 23 827 850 827 850 0.92 12 19 0.0064 0.29 12.1 3.1 1 23 874 896 874 896 0.98 13 19 0.22 9.8 7.3 1.3 1 23 908 931 908 931 0.94 14 19 0.019 0.84 10.6 3.9 2 23 962 983 961 983 0.96 15 19 0.014 0.65 11.0 2.9 3 23 991 1011 989 1011 0.98 16 19 0.35 16 6.6 2.7 1 23 1017 1039 1017 1039 0.97 17 19 3.3 1.5e+02 3.5 2.7 2 23 1060 1081 1059 1081 0.96 18 19 0.0087 0.39 11.7 0.4 3 23 1089 1110 1087 1110 0.94 19 19 0.00042 0.019 15.8 1.7 1 23 1144 1167 1144 1167 0.98
Sequence Information
- Coding Sequence
- ATGGATAACATACAATATTGTCAGCTAATTGTTAAGGCTGAACCTTCAGCGATTGATAATATAGAATCTAGTTTAGCCAGTTTGATATCCGATGTGAAAATAGAGGAAACTGTAGGCGAAAGCGAAAATGTATTGGAGCAAGACGTAGTGGGAAATACATCACACCATGGGGACAATACAAGTAGAATGGATGATTTAGGTACATCGGAAGATGAAATTATAGCCAATGTCGCTAAGAAgatgaatattattaaagaaattgaaaaggtaaatgataaaacaatgaaGACAACCAAAAAGTCAAAAAAAGGTGGTCCGGCTTCAGATTATTTAAAACAAAGGTCTAAAATGATTGTACAGAGTTTTCTGTCGGGACCCGAAGGTTCGTTAGCTCCAATTTGTCACAAAGGTGTTGTGTTAAGGAAAGAGGACAACCGAAACGGTTATACCATCAAAGATGGGGACTTGGCTAAGTTTAAGCGCATAATCAACGGATTTTCAACATATAGTTGCGATGACTGCGATTACACTACGGATTATTTGAATATGTTTAAAATTCACTTCATGACTCATGCAAACAACAAATTTTTATTCGAGTGTATTAATTCCTGTTCCAGTTACATGAAAGTTTCGTATGTAACAAATTTGAAACTTTGTTATATATGTAACTTCAAATGTAAGACGGACATAGATTTAgataaacatataaaaactcatagaaaaaatacaaatgcAGAAGATATTGAATGCACGGATGAAATGAAAGTAATCATACGAGAGGCGATTCAAAAGTTGTTGCTTGACAAATCATCCGTGGGCAAAACCATAGAGAAGACTGTCAAGAAGCAAAACGTACAAAATAGAAAAAGAAGTAATGCGCCTTCAAGATCttcaaaaagaagaaaaacctCCAAGGATAATAATGTTAAAGAGATTAATAAGCCTAAAGTTGTAATTAACGAACAACCGAAACGTGAATCAGAAATGGAGTCGGATAATTTACAATCATTTACTAAAGACGAAGGTTGGGATATTTCGTTGggtaataaaacatttacaatTGAAATCATACCTGAAGAACTAGACGGAAAAAGTGTTAACGAAAACAGTACGAAAATAAGTGAACGACGATCTAATGAATTTTGTACGGCAAACGATATAGATGATGATGATCACCGTGATTACGATGATAGGAATGATGTGTTCGAGGAATACAACgaagaaatatttattaaacaggAACCAGAGGATGATTGTTTCCCTAAGGAGGTTAAGTTGTGCACTGTGAAAATAGAAAACGATCCCGATAATCCAACTACATTTGGTACGCCTGATGAAAACTGTATGGAGGATGACAAGAAAATACTCAAAAATACTAGTCACAAACGCAGAAAGACTTTTTTGTGTAAGAAATGTAATTTCAAAGCCCGGTATCCAAAACAATTTGGAGAACATGATTGTAAGATCCAGTATGTTTGTAATCGGTGCGGAAAAAAATTCAGCGAGAAATCTCTTTGGGAAGAACATGTAAAAACACACAAAGAAACTGTTAttgtttattcaaataataaatttcagtgTGGTGTATGTAAGTTGCAATACGCTAGACGAAACGGAGTGCTTGATCATATACACGATAAACATTGTACCCCCGATAATAAAATATGCGGGAGACAGAATTGCGGCAAGGAAGAGCACCAAGTTAACGATGCGTACGTTTGTTATGTCTGCGGAAAAGAATGTGGCATCAAATCTATTTGGGAAGAACACTTAAAATCACACGAAActgttattgtttatttgaaTAATAGATATCAGTGTGGTGTATGTAAGTCGCAATACACTAGACGGCACGGATTGTCTATTCACATACACGACAAACATTGTACCGCCGATAATAAAATATGCGGGAAACAGATATGCGACAAGGAAGAGCACCAAGTTAACCATGTAAAATCACATGAAGAACCTGTTATCGTTTTTTCGAATAATAAATTTCAGTGTGGTGTATGTAAGTTGCAATACGCTAGACGAAACGGAGTGCTTGATCATATACACGATAAACATTGTACCCCCGATAATAAAATATGCGGGAGACAGAATTGCGGCAAGGAAGAGCACCAAGTTAACGATGCGTACATTTGTCATCTTTGCGGAAAAAAATGTGGCAAGAAATCTCTTTGGGAAGACCATGTAAAATCACACGAAGAAACTGTTATCGTTTTTTCGAATAATAAATTTCAGTGTGGTGTATGTAAGTTGCAATACGCTAGACGAAACGGAGTGCTTGATCATATACACGATAAACATTGTACCCCCGATAATAAAATATGCGGGAGACAGAATTGCGGCAAGGAAGAGCACCAAGTTAACGATGCGTACGTTTGTTATGTCTGCGGAAAAGAATGTGGCATCAAATCTATTTGGGAAGAACACTTAAAATCACACGAAActgttattgtttatttgaataataaatttcagTGTGGTGTATGTAAGTTGCAATACGCTAGACGAAACGGAGTGCTTGATCATATACACGATAAACATTGTACCCCCGATAATAAAATATGCGGGAGACAGAATTGCGGCAAGGAAGAGCACCAAGTTAACGATGCGTACATTTGTCATCTCTGCGGAAAAAAATGTGGCAAGAAATCTCTTTGGGAAGATCATGTAAAATCACACGAAGAAACTGTTATCGTTTATTCGAATAATAAATTTCAGTGTGGTGTGTGTAATGTGCAATACACTAGACGGCACGGAGTGGTTGATCACATACACGAAAATCATTGTACCCCCAATAACAAAATATGCGGGAAAAGGATATGTGCCAAATATTCTATAACTCACGAGTGGATGGGACGAAAGAAACCGACGCTTTATTGCGAACATTGTAAATATCAAACTATTAAAAAGGCGCATCTCGTAAGACACATGTTGTATCATGAGAATCCTACGCCGTTTGGTTGTAGTCAGTGCGATTATAAAACCAAATCAAAGGGGAATTTACATATGCATGAAAGATCCCACATGCCACGTTTAACACATTACTGTACATTGTGTCCATTTCAAACTGATCGTATTACTGCACTAATGAAACATAAGAAGACACACGGAGCTGATGGGGAGATCCTCATGATTGAACCCTCCAACACCAGAGATCCTAGATTAGTCTATTGTGACAGGTGcgaatttaaaactaaatatccGCACGTTTTGAATACTCACAAGATGAAACACGACAACATCCGTCCGCACTTGTGTTCGATTTGCGGAGCTGCTTTTTCCGCCTCTGTGGATCTTTTTGTTCACAGGAAGAATACTCACATTAAatcgaaaatatataaatgttcaTATTGCGATTATAAACATCACATTAAGCAATCTGTTAGGGTTCACGAACGGAGACATACGGGCTTTAAACCGTACAAGTGCGTTATTTGCTCTTATTCCACGAGTTATATGAGTAATCTGACCGTGCATCAGAAGAAACAGCACCCCACTCTGATACCTACTTAA
- Protein Sequence
- MDNIQYCQLIVKAEPSAIDNIESSLASLISDVKIEETVGESENVLEQDVVGNTSHHGDNTSRMDDLGTSEDEIIANVAKKMNIIKEIEKVNDKTMKTTKKSKKGGPASDYLKQRSKMIVQSFLSGPEGSLAPICHKGVVLRKEDNRNGYTIKDGDLAKFKRIINGFSTYSCDDCDYTTDYLNMFKIHFMTHANNKFLFECINSCSSYMKVSYVTNLKLCYICNFKCKTDIDLDKHIKTHRKNTNAEDIECTDEMKVIIREAIQKLLLDKSSVGKTIEKTVKKQNVQNRKRSNAPSRSSKRRKTSKDNNVKEINKPKVVINEQPKRESEMESDNLQSFTKDEGWDISLGNKTFTIEIIPEELDGKSVNENSTKISERRSNEFCTANDIDDDDHRDYDDRNDVFEEYNEEIFIKQEPEDDCFPKEVKLCTVKIENDPDNPTTFGTPDENCMEDDKKILKNTSHKRRKTFLCKKCNFKARYPKQFGEHDCKIQYVCNRCGKKFSEKSLWEEHVKTHKETVIVYSNNKFQCGVCKLQYARRNGVLDHIHDKHCTPDNKICGRQNCGKEEHQVNDAYVCYVCGKECGIKSIWEEHLKSHETVIVYLNNRYQCGVCKSQYTRRHGLSIHIHDKHCTADNKICGKQICDKEEHQVNHVKSHEEPVIVFSNNKFQCGVCKLQYARRNGVLDHIHDKHCTPDNKICGRQNCGKEEHQVNDAYICHLCGKKCGKKSLWEDHVKSHEETVIVFSNNKFQCGVCKLQYARRNGVLDHIHDKHCTPDNKICGRQNCGKEEHQVNDAYVCYVCGKECGIKSIWEEHLKSHETVIVYLNNKFQCGVCKLQYARRNGVLDHIHDKHCTPDNKICGRQNCGKEEHQVNDAYICHLCGKKCGKKSLWEDHVKSHEETVIVYSNNKFQCGVCNVQYTRRHGVVDHIHENHCTPNNKICGKRICAKYSITHEWMGRKKPTLYCEHCKYQTIKKAHLVRHMLYHENPTPFGCSQCDYKTKSKGNLHMHERSHMPRLTHYCTLCPFQTDRITALMKHKKTHGADGEILMIEPSNTRDPRLVYCDRCEFKTKYPHVLNTHKMKHDNIRPHLCSICGAAFSASVDLFVHRKNTHIKSKIYKCSYCDYKHHIKQSVRVHERRHTGFKPYKCVICSYSTSYMSNLTVHQKKQHPTLIPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299722;
- 90% Identity
- iTF_00299722;
- 80% Identity
- iTF_00299722;