Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.11 5.1 8.1 0.7 2 23 80 101 79 101 0.96

2 7 0.0027 0.12 13.2 0.8 1 23 105 127 105 127 0.97

3 7 0.00016 0.007 17.2 1.5 2 23 133 155 132 155 0.95

4 7 0.00014 0.0062 17.3 1.2 2 23 162 184 161 184 0.93

5 7 8.8e-05 0.004 17.9 3.2 1 23 191 214 191 214 0.98

6 7 0.68 30 5.7 3.0 1 23 220 243 220 243 0.89

7 7 0.00041 0.019 15.8 2.7 1 23 249 271 249 272 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.11	5.1	8.1	0.7	2	23	80	101	79	101	0.96
2	7	0.0027	0.12	13.2	0.8	1	23	105	127	105	127	0.97
3	7	0.00016	0.007	17.2	1.5	2	23	133	155	132	155	0.95
4	7	0.00014	0.0062	17.3	1.2	2	23	162	184	161	184	0.93
5	7	8.8e-05	0.004	17.9	3.2	1	23	191	214	191	214	0.98
6	7	0.68	30	5.7	3.0	1	23	220	243	220	243	0.89
7	7	0.00041	0.019	15.8	2.7	1	23	249	271	249	272	0.96

Coding Sequence: ATGTtatcaaaaatgaaaaaagagtTTGAAGCAATGGattattatttagataataataatacattacctGTTGTTCATGATTATTATTCAGATAATAATGATGTATTCCATGAGGAGAATGGACAGGAGAGTGATTCATGTGAGAGTGTTAAGTCAGACGAGATGTCGAGAGCTACAGAATGTAAGACTCGAAAGGAAGAACCATTTAGTATTCCTAAACTGGATCCAACACAAACACAATGTCCTCTCTGTGAGGCACAACATcctgataataatttattaaacaaacattacatGACACATTATCCTGCATATATTTGTCATGTTTGCGGCAAGCCTTTAATGACACTACGTGTATACAAGAGACATCTCATATCGCACAGTAAATTGCAGATTCCATGTGATTTGTgcgagaaaaggttcaagaatTCCGAAGCCTTgcattcacataaaaaaataaggcaTTTTCAACATTCCCCACTTGTTTGTCCGCATTGCGATAAGAGGTTTAAGAGTACAAGTGTGAGAAAGAGGCACATTCTAGAGGCTCACGGGATTAAGCCGACCATGTACAAGTGTCCCGAGTGTGATTTAGAGTTTTATAGTCCATGTCACGTAGAGAGACATAGGAAAAGAATTCATTTGAAGATAAGAGAACACCACTGTCAGATATGTTACATGGCATTTTTTGATTCAACTGAATTAAAGTTTCATATCTCAGCCAAGCATGAAGGTGTCAGGAGTTATAAATGTGAGATGTGCGACAGGACATATGGTTATGCTCAGGGTCTACGGTATCATCGTATGAAACATCACAATCAGGACGGCTAA
Protein Sequence: MLSKMKKEFEAMDYYLDNNNTLPVVHDYYSDNNDVFHEENGQESDSCESVKSDEMSRATECKTRKEEPFSIPKLDPTQTQCPLCEAQHPDNNLLNKHYMTHYPAYICHVCGKPLMTLRVYKRHLISHSKLQIPCDLCEKRFKNSEALHSHKKIRHFQHSPLVCPHCDKRFKSTSVRKRHILEAHGIKPTMYKCPECDLEFYSPCHVERHRKRIHLKIREHHCQICYMAFFDSTELKFHISAKHEGVRSYKCEMCDRTYGYAQGLRYHRMKHHNQDG

Sequence clustering based on sequence similarity using MMseqs2