Cdis005912.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756362.1:16878471-16879907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.24 11 7.1 0.2 1 20 211 230 211 231 0.97 2 9 2.7 1.2e+02 3.8 2.6 3 23 240 260 239 260 0.93 3 9 0.0019 0.086 13.7 1.2 2 23 267 289 266 289 0.93 4 9 0.0027 0.12 13.3 3.1 1 23 300 322 300 322 0.98 5 9 7.1e-05 0.0032 18.2 1.5 1 23 334 357 334 357 0.98 6 9 0.00036 0.016 16.0 1.3 1 23 366 388 366 388 0.98 7 9 0.00099 0.045 14.6 2.1 3 23 399 419 397 419 0.95 8 9 0.00011 0.005 17.6 0.2 1 23 424 446 424 446 0.98 9 9 0.027 1.2 10.1 0.0 3 23 453 474 451 474 0.92
Sequence Information
- Coding Sequence
- atggaaaagtTCAACACGTACTGCCGCCTTTGTTTAACACAAACCGAGCCCCTTACACCAATTTTTGGTAGCGAAAACAACATTCCATTACAACTATCAACTTGTTTATCCATCGAAATTACAACAGAAGACTTACTCCCTAAGAGTATTTGCGGTAAATGTTCCAAAACTCTTCACGAGTATTACATGTTTTATATTAATAGCAAATGTTGTGAACAATGGCTCTTAACATGTCTTTCCAATGAGCCTTCTCAGATATTTGAAACTACTAAAGAAGCTTTCCATGAGAAGGAACAAAACACGACAGAGCAATCACCTTCTCACAGTGAATTTTTACCGGAATTCTTAGATATGGAACTATTAAACAGCGATTCAAACACATTCACAGCACTGGAATATTTAACAAATGATAATGAAGCTCAGGCATCAAATAATgacataaaaattacaaaaataacaaattataaaggCTCTTCAGAGTCTAGTGCTCCGTATGATTATTATGAGATTCATATGGACATTGATGTGTTGGATTCAGATCTGGATATTGTGAATGAGATATTGGCCAAACAATCAAAGACttctaaattaaaacatttgaaAAGTCCGTGTAGTGTACAATATGAGAATTACTCTTGTTTGTCCTGTAAGGCAATGTTTCAAGATTTTGAGGAGCTCGCCCATCACATGGGGGGCTGTGATGCCCTGAGGAGGACATGCACATGCTGCGGAATATTATTCCAATCTAAAGAAAGTATGTTGAAACATAAGAACGTCCATAACGAACTGAAACTGTTAACCTGTGAACATTGCAACAAACAGTTTGTTGGACAAGACAGATTAAGTCAACACATAGAACAGTCACATTCTGATTTTGTATCCGATTCAGGTTTCATTTATAGATGTAAACATTGTGGAGACATATTCCAATCTAAAGATAAGTTATATAATCATGCTAAGATGCACGTTAAAACAAAAGccaaagaaaagaaaaagaaatttgTTTGTAATGAATGTGGTGTGGTTTGTTCTACggaaaacaatttattaaaccACAAGAAGACAAAACATGATAGTAAAACTACCTCTTGTGTTTACAGGTGTAAAGTTTGTCTCAAAATATTCACAGATAGAGATGTTTTATATAAACATGTTAAACAACACACAAATGTCTTGGAAAGGACTCTACATTTATGTGACAGCTGTGGTCAGAGTTTTAATTCATATAACACTTTATCTAAACATGTTCTAACTCATGTCGGTAATCAATTTCAGTGCATGATTTGTTTAAAGCCGTTTATCAATGGTAGCCTGCTGAAAAAACATTTGGCTACTCATGAAATTGAAACACAGATATGTGAATTATGTGGTCTGATATTTTCCAATGATATCCTCTTGAATATGCATCAAAGTGATGTTCACAGTGTTCTATTTTAA
- Protein Sequence
- MEKFNTYCRLCLTQTEPLTPIFGSENNIPLQLSTCLSIEITTEDLLPKSICGKCSKTLHEYYMFYINSKCCEQWLLTCLSNEPSQIFETTKEAFHEKEQNTTEQSPSHSEFLPEFLDMELLNSDSNTFTALEYLTNDNEAQASNNDIKITKITNYKGSSESSAPYDYYEIHMDIDVLDSDLDIVNEILAKQSKTSKLKHLKSPCSVQYENYSCLSCKAMFQDFEELAHHMGGCDALRRTCTCCGILFQSKESMLKHKNVHNELKLLTCEHCNKQFVGQDRLSQHIEQSHSDFVSDSGFIYRCKHCGDIFQSKDKLYNHAKMHVKTKAKEKKKKFVCNECGVVCSTENNLLNHKKTKHDSKTTSCVYRCKVCLKIFTDRDVLYKHVKQHTNVLERTLHLCDSCGQSFNSYNTLSKHVLTHVGNQFQCMICLKPFINGSLLKKHLATHEIETQICELCGLIFSNDILLNMHQSDVHSVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179946;
- 90% Identity
- -
- 80% Identity
- -