Cdis000612.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756358.1:12320582-12322042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.62 28 5.8 2.0 1 23 12 34 12 34 0.96 2 11 0.0047 0.21 12.5 1.0 2 23 128 149 127 149 0.96 3 11 1.1e-05 0.00048 20.8 0.7 1 23 189 211 189 211 0.97 4 11 0.00023 0.011 16.6 1.7 1 23 233 255 233 255 0.97 5 11 0.72 33 5.6 0.3 5 23 267 286 261 286 0.88 6 11 2.9 1.3e+02 3.7 1.1 1 23 291 313 291 313 0.94 7 11 0.00011 0.005 17.6 4.1 1 23 324 348 324 348 0.91 8 11 0.0053 0.24 12.3 9.1 2 23 351 372 350 372 0.96 9 11 0.00026 0.012 16.4 2.3 1 23 378 400 378 400 0.99 10 11 1.1e-05 0.00051 20.7 3.5 1 23 406 428 406 429 0.95 11 11 1.6 73 4.5 0.4 5 23 443 462 435 462 0.81
Sequence Information
- Coding Sequence
- ATGCCTCCTTATTATCAAGATCAAGGTGATGTTTTTCAGTGTGGAAGATGCAAACAAAATTTCTATTCCATTTTAGAGTTTCTATCACACAAAAAAGAGCACTCAAGTGAACAAAGAGTGTGTCACATGGTGAATGTGTTTCCTAATAATATCATTGCATTGTCACAGCCTTCCAATGAAATATGGATATTAAAGGAAGATAACGTAGAAATTGGTGAATGTGAAGCTAACTTATTAGACACTTCAAATACAATCATAAACTTTGGCAGTCGGGAACCTTTCGTTCAATCTGACTTTGTTGTTGAGACAACTGAGAATTTGGAATGTAAACCAAATTCCCCGTTAGTTTTCATCGCAGATAAGGAGACTGTTAATCCATTATCTTGTTCGTCTTGTGGTGAGTGCTTTGAATCTGATATTGAGTTGACATCACACACACAAAGTCATCTTTCATTAGAATCTGTCATTCAAGAAGATCCGACAACATACACATCAATAGATTCTAATCTCGAAACAGATTCACAAGTAACTTCCCAGCCTAGTGTTGAGTCTCGAGAAAAATATTTCCAGTGCATTGTTTGTGGAAGAATATTCGCTGACAAatcttttttaaagaaacacaTGTCGACCCACAAAGTATGGCCTGACAACCTTGGGAAAACATTGCCTAAGGACTCGACCACAAACGAACGTAGTCATGTGTGTCCGTACTGTCAACAAATTTTTCAAACTTACATTAATCTGAGAACACACCTAAAAGAACACAAACATCAAAAGGTTTTTAAATGTATTCAAGAAAACTGTGCAGCCATGTTTGTTGATTTAGAATCCTTACATTCTCATATAAATGTTACACACGATAGTGTTGTATATCACTGTCATGTTTGTACAAGTGTTTTAACATCCTTAGTGGAATCTGCTGCCCATCAGCTGACACATTCTGTTGATGAAGGCATCAGGAAGAAAGTTTACCAGTGTGTTCATTGTAAAGCAACATTCAAAAGAAATTATAGCCTAAAGCATCACTTGGATACAGTGGATCACGTTAACAAATGTAGACATTGCAATAAGTGTTTTGTCAGTGAGAGATCATTACGTAAGCATCTTCATCTGCATAATGAGTCTGTTTCATATAAATGTGATGTATGTTCGGCATCATTTAAAATGAAACACTATTTGTCATCACATTTAGCTACGCATAGTAAAACCAAGCAATTTTCCTGCAATATGTGTGATAAAGACTTCAAGAGGAAAGATTTGCTTCTGAGGCATTCTAAAGTTCATCATCCTGATCAGTGGAAACATTGTCCGTATAGAAGTGAATTGGGATGCATGGTGGAGTTTACGAGAACAGATAAACTTAATCAACATATTGTCAAAATACACTCCAACAAAGTGAGTGTGGAAACGCATGTTTCTCCattagaaattattattgttcctgTGCAGGGAGGCACATGA
- Protein Sequence
- MPPYYQDQGDVFQCGRCKQNFYSILEFLSHKKEHSSEQRVCHMVNVFPNNIIALSQPSNEIWILKEDNVEIGECEANLLDTSNTIINFGSREPFVQSDFVVETTENLECKPNSPLVFIADKETVNPLSCSSCGECFESDIELTSHTQSHLSLESVIQEDPTTYTSIDSNLETDSQVTSQPSVESREKYFQCIVCGRIFADKSFLKKHMSTHKVWPDNLGKTLPKDSTTNERSHVCPYCQQIFQTYINLRTHLKEHKHQKVFKCIQENCAAMFVDLESLHSHINVTHDSVVYHCHVCTSVLTSLVESAAHQLTHSVDEGIRKKVYQCVHCKATFKRNYSLKHHLDTVDHVNKCRHCNKCFVSERSLRKHLHLHNESVSYKCDVCSASFKMKHYLSSHLATHSKTKQFSCNMCDKDFKRKDLLLRHSKVHHPDQWKHCPYRSELGCMVEFTRTDKLNQHIVKIHSNKVSVETHVSPLEIIIVPVQGGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -