Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756378.1:9691152-9693974[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.096 4.3 8.4 0.5 1 23 170 192 170 192 0.98

2 13 0.011 0.5 11.3 2.4 1 23 198 221 198 221 0.97

3 13 0.0012 0.055 14.3 0.5 2 23 323 344 322 344 0.97

4 13 0.045 2 9.4 2.0 1 23 350 373 350 373 0.89

5 13 0.046 2.1 9.4 2.9 1 23 395 417 395 417 0.98

6 13 0.24 11 7.1 0.2 1 20 423 442 423 444 0.95

7 13 3.2 1.4e+02 3.6 0.5 1 23 470 492 470 492 0.92

8 13 0.031 1.4 9.9 1.9 1 22 498 519 498 521 0.89

9 13 6.3e-06 0.00029 21.5 1.2 3 23 539 559 538 559 0.99

10 13 2.3e-05 0.0011 19.7 0.2 1 23 565 587 565 587 0.99

11 13 9.3e-05 0.0042 17.9 1.0 2 23 594 615 593 615 0.97

12 13 1.6e-05 0.00071 20.3 0.8 1 23 621 643 621 643 0.98

13 13 0.076 3.4 8.7 3.6 1 23 649 672 649 672 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.096	4.3	8.4	0.5	1	23	170	192	170	192	0.98
2	13	0.011	0.5	11.3	2.4	1	23	198	221	198	221	0.97
3	13	0.0012	0.055	14.3	0.5	2	23	323	344	322	344	0.97
4	13	0.045	2	9.4	2.0	1	23	350	373	350	373	0.89
5	13	0.046	2.1	9.4	2.9	1	23	395	417	395	417	0.98
6	13	0.24	11	7.1	0.2	1	20	423	442	423	444	0.95
7	13	3.2	1.4e+02	3.6	0.5	1	23	470	492	470	492	0.92
8	13	0.031	1.4	9.9	1.9	1	22	498	519	498	521	0.89
9	13	6.3e-06	0.00029	21.5	1.2	3	23	539	559	538	559	0.99
10	13	2.3e-05	0.0011	19.7	0.2	1	23	565	587	565	587	0.99
11	13	9.3e-05	0.0042	17.9	1.0	2	23	594	615	593	615	0.97
12	13	1.6e-05	0.00071	20.3	0.8	1	23	621	643	621	643	0.98
13	13	0.076	3.4	8.7	3.6	1	23	649	672	649	672	0.95

Sequence Information

Coding Sequence: ATGGAGTGCagattttgtttgaaaaaatcTCCGAAACCAAAACACAACATCCATGAGCTGGATTTCAAGATTCTTCGTATTATTGAAGAAATGTTAAAGATTAGCGAGGAGGATGAATTGCCTAAACTAATTTGCAAATATTGTGTAACTAAACTAAAAACTATAGAGAACTTTATTAGGCAATGTGAGGAGAGTGATGCATActttaaaaacaatataattctCTCTATTAAAAATGAACCTGAATTGTTTATATCAGAGTTTGATGATCTCATTGAGATTAATACAGATACGGCAGTAGAGTTGGGTCAAGTGGAAATACAATATACAGTGGCTAATGAAGAATCTCAGATAAAAACATGTAATGAAAGCGAAATAGATAATCTAGAATGTTCCGACAATGAAGATAGATTAGATGTAGGAGAAGACAATACTGTGGAAGATTCAACTAATTCTAACATAGTTGAGAGTAACAAATTCAATGAAAGTAGTTCTGATAAGACAACATATTCCTGCTCGCATTGTCCAGCAGAATATGAGGAGAAAAATCTGTACgatttacatattaaaatacacgATAATAAAAAACAGTATCCTTGTCATTTTTGTCCGATTGTATTTGGCCATAGGATGAGTCGAATAAGACACATGGAGAAATCTCATAAAGAAGCTTGGGATATTAAGCGTAAGAAAGGAAAGAGTACAAGTAAACTGGAAACTGTTATAAAACAAGTTGATGAGCAGTTGTTGCTTAATGACAATATTACTAAAGAAGTTTTAGATATTCCAGGAGATAATGTTGCAGGGGATGTGACTAGTAATGATATAACAGAACGTCAGGAAGAAACCAAGTCTGTCGAACAAGCTCCAAATAGTTCCAACAAGATCTTGTATGATAATGTAACCAATGATGTTGAGGAAGTAAGGAATACAATGACTGATATTCAGACGCATGGAGATGTTCTTAAATGTTCTCTTTGTCCcgcaaaatacaaaaacagacGACAGCTTGAGATGCATGTTAAAATACACAATTGTTGTACAATATTCACATGTCAGTATTGCCAGATAGTCTTTGAATCGAAATCAGGTCGTCGTTTGCATCACGTATTGTATCATACGGAGAGAGAGAACCTCAAGAAAGGCGAAGTCTATGTCGCTAATGATAATGATTGTAAATCGTACGTGTGTCCGCATTGTTACTGGATGTGGGATCATGTATCGGATTATAAACGTCATCTCAAACGACACGAACGGAAACCAACGTTTACTTGTCAGTTCTGTCAAATAGTTTATTGGAAAGCGTCCAGTCTTAATAGGCATGTTGTAAAATGTCCCGAAAACGAAGCTTTGAAACCCAAAATTAGAAAGAGTTTAAAAGAATTAACACCGCCAAAAAAGCGAGTGTATGCATGCTCGCAATGCCCTGCAGTTATCAAAAGCATCAATGCGTTTATGCGCCACTGTAAAGTACACGAGAGTGACGTAACATTTGCATGTCGGTATTGTAATGTTGTTTTTGCTTCGAAACATAATCGTAGTAGGCATGTGGGTCAAAAACATCGTGCAGAAATTATGAAGAACAAGAAAGAATCGTACCCCGGTCCTCAGTTATGTCCGATATGCGGTAAGGTTTGCCGGAATAGAGATGCATATGAAAAACACTTAAAGACACACTCCACAGAAACAAATTATCAATGTGACATATGCTCCAAAACATTTAAAAGTAATGAGGCTATTGCGCAACATTTAGCCACTCACACTGGAgagaaaaatatacaatgtcCGATATGTGACAAGAAATTCCGCGAGCGCATATGTTTGTCTAAACatctcatcattcattctgaGGAGAGACCGTTCACGTGTAGTTATTGTCCCAAAGCCTTCAAATCTATTGATTATCTAAAGGAGCATGAGAGACTTCATACGGGAGAACGCCCATTCAAGTGTCCCGTGTGTCTGAGAGGATATGCACAACGCTGCAACATGAAAAGTCACTTCAAATATAATCACAGAGACTTGGATTACTACCAAGAGTTGGAGAGATATAAGACGTCACTGAAACAACAGCTTCCGAATACCATAGatagttaa
Protein Sequence: MECRFCLKKSPKPKHNIHELDFKILRIIEEMLKISEEDELPKLICKYCVTKLKTIENFIRQCEESDAYFKNNIILSIKNEPELFISEFDDLIEINTDTAVELGQVEIQYTVANEESQIKTCNESEIDNLECSDNEDRLDVGEDNTVEDSTNSNIVESNKFNESSSDKTTYSCSHCPAEYEEKNLYDLHIKIHDNKKQYPCHFCPIVFGHRMSRIRHMEKSHKEAWDIKRKKGKSTSKLETVIKQVDEQLLLNDNITKEVLDIPGDNVAGDVTSNDITERQEETKSVEQAPNSSNKILYDNVTNDVEEVRNTMTDIQTHGDVLKCSLCPAKYKNRRQLEMHVKIHNCCTIFTCQYCQIVFESKSGRRLHHVLYHTERENLKKGEVYVANDNDCKSYVCPHCYWMWDHVSDYKRHLKRHERKPTFTCQFCQIVYWKASSLNRHVVKCPENEALKPKIRKSLKELTPPKKRVYACSQCPAVIKSINAFMRHCKVHESDVTFACRYCNVVFASKHNRSRHVGQKHRAEIMKNKKESYPGPQLCPICGKVCRNRDAYEKHLKTHSTETNYQCDICSKTFKSNEAIAQHLATHTGEKNIQCPICDKKFRERICLSKHLIIHSEERPFTCSYCPKAFKSIDYLKEHERLHTGERPFKCPVCLRGYAQRCNMKSHFKYNHRDLDYYQELERYKTSLKQQLPNTIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -