Cdis014582.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756372.1:11994483-11995979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.079 3.6 8.6 1.4 2 23 180 202 179 202 0.96 2 11 2.1e-07 9.5e-06 26.2 0.8 1 23 209 231 209 231 0.98 3 11 1.4e-05 0.00062 20.5 0.1 1 23 237 259 237 259 0.96 4 11 3.6e-05 0.0016 19.2 0.8 1 23 265 289 265 289 0.97 5 11 0.17 7.7 7.6 2.9 1 23 295 317 295 317 0.97 6 11 0.15 6.6 7.8 4.4 1 23 323 345 323 345 0.93 7 11 2.1e-06 9.4e-05 23.0 0.9 1 23 350 373 350 373 0.98 8 11 1.7 76 4.5 0.2 2 18 379 392 379 397 0.70 9 11 0.00013 0.0056 17.4 1.8 1 23 403 425 403 425 0.96 10 11 0.036 1.6 9.7 1.5 1 23 431 456 431 456 0.90 11 11 0.00049 0.022 15.6 2.4 1 23 462 485 462 485 0.97
Sequence Information
- Coding Sequence
- ATGGAAACTAATGTAAAGAATGAAAACACCTGTAGGACATGTTTGAAAAGTGCCAAAGACGATGGAGTGTGCCTCTACGAATGTTGTGATTATGAGTGCGTTAACGTTAGTGAATGCAATAATCCCAAGGGAGTAAAGTACAGCGAGATGTTGTCTTTCGCTGGAATATGTGCAAAGGAAGGAGACGGCCTCCCAAACAAGATGTGTGGACAATGCAGTGTACTATTGCCGCAGGCCTGGAGCTTTTTAAACATGTGCAAGACTTCTGACACTGTGCTGCGACACACAAATGTCTTGGTAGAAGTGAAGTTAGAGGAAGTGGCCGAGGGTGAACTAAAATTAGAGGAAGTGGAGGAGGATGAACAAGAGGATGAAGTGAACCTCGAGGATGTAATAGACCAGGAAGACGAAACAGATGAGGAAATGGATAAAGCAGTGAAGGAAGCAATGTTATTTAGAGATGAACAAAGTGAAGAACCTGTCCGAAAAACAAGGGGTAGAAAGAAAATAAAGAGAAACAAACCTGTGGGGGCGTGGAAGTGTGCTGAGTGTGGAACTGATGTTGAGACAGAATGTAGACTTAAGAAACATTACAAGAGAGAACATCCAGATATAGATTATACATATCCATGTCAGGAGTGTAGTAAAATCTTTAAAAGACGAACTGATCTCCGAGTACATATGCGAGTTCACAACGGGGAACGGCCTTATGCTTGTGATATGTGTGGGGCGAGCTTCAGTCAGTGGGGGACATTAAATCAACATAAGAACGCACATACGGGAGAAAAACCATATATTTGTTCTGCAGCCAAGTGTAAGAAACGCTTTGGCTCATCCTCATCACTACGGCGACACGAACTCACACATAGTGGAGAGAGACGCCACGTGTGTGAACTATGTGGCAGTAAGTTTATATGCACCACATCACTTCGCGTTCATCTAATGACTCATTCTGCCCAGCGACCACATAAATGTTCTCTCTGTGAACGAACGTTTAAATCTCGTTTAGCTCTACGTTGCCACGAGATGATACACGGGGAGCGGACGTTTGTGTGTGAGGATTGCGGCAAGGAATTCTTTGTGAAGGGAAATCTTAGTAAACATCGTAGGAAGATGCACGGTGAGGGAGCGGGTACTTGTCCTATTTGTCGCAAGGCTACGTCAGATCTTAAGGAGCACGCCACCATCCACTCTCAGGAGCTCAACTACAAGTGTAAGGTGTGTCAGCGAAGCTTCCGTCACAAAGGCATCCTGAACGCACACATGGTGTTACATAAGAATGCCAACAAGTACAAGTGTCCTGCGGAGGGTTGCACCAAGGCTTTCTACAGGAAGAATCTTCTAGATTTCCACCACAATAAAGTCCATGCTAATGTTACACCGCACCAATGTCCTCACTGTCCTGTTGGTTTCTTCAGAATCAGCGACATGACTCGACACGTCAATACATTCCATTCTAATCAAGGCAGGGGACCTCATGAGACTACGATCAAGTGA
- Protein Sequence
- METNVKNENTCRTCLKSAKDDGVCLYECCDYECVNVSECNNPKGVKYSEMLSFAGICAKEGDGLPNKMCGQCSVLLPQAWSFLNMCKTSDTVLRHTNVLVEVKLEEVAEGELKLEEVEEDEQEDEVNLEDVIDQEDETDEEMDKAVKEAMLFRDEQSEEPVRKTRGRKKIKRNKPVGAWKCAECGTDVETECRLKKHYKREHPDIDYTYPCQECSKIFKRRTDLRVHMRVHNGERPYACDMCGASFSQWGTLNQHKNAHTGEKPYICSAAKCKKRFGSSSSLRRHELTHSGERRHVCELCGSKFICTTSLRVHLMTHSAQRPHKCSLCERTFKSRLALRCHEMIHGERTFVCEDCGKEFFVKGNLSKHRRKMHGEGAGTCPICRKATSDLKEHATIHSQELNYKCKVCQRSFRHKGILNAHMVLHKNANKYKCPAEGCTKAFYRKNLLDFHHNKVHANVTPHQCPHCPVGFFRISDMTRHVNTFHSNQGRGPHETTIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -