Cdis020269.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756379.1:9386363-9395901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.4e-05 0.002 18.9 3.4 2 23 244 265 243 265 0.98 2 13 0.034 1.5 9.8 0.0 1 23 269 291 269 291 0.98 3 13 9.6e-05 0.0043 17.8 0.4 2 23 297 319 296 319 0.96 4 13 0.018 0.82 10.6 2.2 1 23 355 378 355 378 0.98 5 13 0.001 0.046 14.6 0.4 3 23 386 407 384 407 0.93 6 13 0.03 1.3 10.0 0.4 2 23 524 545 523 545 0.93 7 13 0.004 0.18 12.7 1.1 1 23 549 571 549 571 0.98 8 13 0.00087 0.039 14.8 0.2 1 23 576 599 576 599 0.97 9 13 0.0014 0.064 14.1 0.7 1 23 605 628 605 628 0.93 10 13 0.089 4 8.5 4.4 1 23 635 658 635 658 0.97 11 13 0.06 2.7 9.0 1.5 3 23 666 687 665 687 0.93 12 13 0.00046 0.021 15.7 1.8 1 23 693 715 693 716 0.96 13 13 1.6e-05 0.00072 20.3 1.5 1 23 721 743 721 743 0.99
Sequence Information
- Coding Sequence
- ATGAATTGTGAAGTTAAAAAAAGTAGGAGAGTAAACCAATGCATAATTTGCGATGGAAAAGAAGGTTTAAAGATTATACATAAGGTTTACACAGAAATGTCAGTTTCTTATGCGGGACTTCTGTTTCAGTGTTTTTCTATTCAGTTTCTTGACGCTCATCTTGGAAAGCCCAAAATGTTGTGTAAAAAATGTACTGAAAGCATTCAATTTTGTGTGGACTTTCGTAAACAAGTGGAAATTGCACATAAAAAACTTTACAACATAGTGTCAACTGAGTCATCTATCAACGAATATTTTAAAATCGATAAATCTTCAATAGCACTTAAACCATTGACAGAGATTAAAGCAGAACCAGATGATGAAGACAACAATGCTTCTAATACTAAACATATTCCAATTCATGATAATACTAAGAATCTACTGGCAGCggaaattgaaacattatcaaaaattaaaGAAGAATTTGAAACAATGGATTATTCAGATAATACTGATACATTCCATGTTACTCATGATTATTCAGATAATACTGATACATTCCATGTTACTCATGATTCTTcagataataatgatatattcCATGAGGAGAATGAACCAGAGAGTGATTCATCATCAGTTAAGACAGACGAGATATTTAGAGCTACGGGATATAAAGGGTATAAAGCTTTAAAGAGAAAGTCCAAAAAGAAAGAACCATTAAGTATTCCTAAGCTGGAACCAACACAAACACAATGTCCTCTGTGTGAGAAACAATTCcgtgataataatttattaaacaaacatcacaagaCACATTATCCTGCATATATTTGTTATGTTTGTGGCAAACCTGCGATGAAACTAGATGCTTATAAGGCTCATCTAGCAACGCATGATGGATTCCAGATTCAGTGTGATTTGTGCGAGAAAAAGTTCAAAAGTGCCGCAACCCTAAATCAGCATAAAAAAGTAGTCCATCTTAAGCGAGCCCCAGTTGGTTGTCAGCATTGTGCAGAGAGATTTGATAGTACAGGGATTAGACACAGACATATGCTAGAAGTTCATGGGATTAAGTCAACCATGTACAAGTGTCCCACTTGTGATGCAGAGTTTCATAGCCCATGTTTCGTGGAGAGACATGTGAAAAGAgcacatcttaaaataaaaaaccaaaATTGTCAAATATGTAATACGTCATTTTTTGATTCTAATGATTTAAATGATCATATCTTAGCCAAACACGAAGCTTCTAATACTAAACATATTCCAATTCATGATAATACTAAGAATCTACTGGCAGCggaaattgaaacattatcaaaaattaaaGAAGAATTTGAAACAATGGATTATTCAGATAATACTGATACATTCCATGTTACTCATGATTATTCAGATAATAATGATATTCATGTTATTGATGATTCTTcagataataatgatatattaaATGAAGAGAAAGATGAGGAGAGTGATTCATCATCAGTTAAGACAGACGAGATATTTAGAGCTacagaatataaagaaatatcaaaaaaatctaaagagAAATCATCATTTAGTATTCCTGAACTGGAACCAACACAAACACAATGTCCACTATGTGAGAAACAATTccttgataataatttattaaacaaacattatgTAGAACATTATCCTGCATATATTTGTCATGTTTGTGGCATATCTTTAATGAATTATGCTAAATATAAGAGACATCTCCTGTCGCACGACGGATTGCAATTTCCGTGTGATTTGTGTGAGAGAAAGTACGATACATTGGCATATTTGAATGCACATAAAAGAGTAGTCCATTTAAAACAAGCCCCACATATTTGTAAGATATGCGGGAAGAGatttattaatgtaatatgGAAAAAGAAGCACATGCTAGAAGCTCACGGCATTAAGTTAACCATGCACAAATGTCCCACTTGTGATGCGGAGTTCTATCTTCCATGTCACGTGGAGAGACATGTGAAACGAacacatcttaaaataaaagataACCATTGTGAGATATGTTTCACATCATTTTTTGATACTAATGAATTAAAGTATCACATCTTAGCCAAACACGaagGTATAAAGAGTTACAAATGTGAGATGTGCGACAAGACATATGGTTATGCTCGAGGCTTGCGTCTCCACCGTAAGGCTCATCACAATCATAAGGGCTATGAATGTCAGACGTGTGGAGCACTATTTGAACGGCAAGCAAACCTTAAGCATCATCTTAAAACTCACGAGCCATCAGAGTGA
- Protein Sequence
- MNCEVKKSRRVNQCIICDGKEGLKIIHKVYTEMSVSYAGLLFQCFSIQFLDAHLGKPKMLCKKCTESIQFCVDFRKQVEIAHKKLYNIVSTESSINEYFKIDKSSIALKPLTEIKAEPDDEDNNASNTKHIPIHDNTKNLLAAEIETLSKIKEEFETMDYSDNTDTFHVTHDYSDNTDTFHVTHDSSDNNDIFHEENEPESDSSSVKTDEIFRATGYKGYKALKRKSKKKEPLSIPKLEPTQTQCPLCEKQFRDNNLLNKHHKTHYPAYICYVCGKPAMKLDAYKAHLATHDGFQIQCDLCEKKFKSAATLNQHKKVVHLKRAPVGCQHCAERFDSTGIRHRHMLEVHGIKSTMYKCPTCDAEFHSPCFVERHVKRAHLKIKNQNCQICNTSFFDSNDLNDHILAKHEASNTKHIPIHDNTKNLLAAEIETLSKIKEEFETMDYSDNTDTFHVTHDYSDNNDIHVIDDSSDNNDILNEEKDEESDSSSVKTDEIFRATEYKEISKKSKEKSSFSIPELEPTQTQCPLCEKQFLDNNLLNKHYVEHYPAYICHVCGISLMNYAKYKRHLLSHDGLQFPCDLCERKYDTLAYLNAHKRVVHLKQAPHICKICGKRFINVIWKKKHMLEAHGIKLTMHKCPTCDAEFYLPCHVERHVKRTHLKIKDNHCEICFTSFFDTNELKYHILAKHEGIKSYKCEMCDKTYGYARGLRLHRKAHHNHKGYECQTCGALFERQANLKHHLKTHEPSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -