Cdis016562.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756375.1:3205032-3206729[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.028 1.2 10.1 0.2 2 23 205 226 204 226 0.97 2 10 0.0083 0.37 11.7 5.5 1 23 232 255 232 255 0.96 3 10 3.1e-07 1.4e-05 25.7 0.7 2 23 304 325 303 325 0.97 4 10 0.00066 0.03 15.2 0.3 2 23 332 353 331 354 0.95 5 10 0.00011 0.005 17.6 0.6 1 23 360 382 360 382 0.97 6 10 2.8e-05 0.0013 19.5 2.2 1 23 388 411 388 411 0.97 7 10 7.6e-05 0.0034 18.1 0.6 2 23 418 440 417 440 0.96 8 10 0.076 3.4 8.7 1.5 3 23 446 463 445 463 0.89 9 10 1.9e-05 0.00086 20.0 7.5 1 23 474 496 474 496 0.98 10 10 0.00057 0.026 15.4 3.0 1 23 534 557 534 557 0.97
Sequence Information
- Coding Sequence
- ATGGATCAGAAAGACAAACTCATTTGCAGAATATGTCTCGCGGAATGCCACAGAAAAGTTATATTGTTCGAATACAAGAACGATGTAAAATACAGTGATTTAATTAAGGAATATATTGGCATTGCGTTAATCAACGAAGAAAATCTCCCGAAAGGTTTGTGTAAACAATGTCAAAGTGATTTAAATGCGGCTGTGAGGTTTATTTCCAAAATAAGAGTGTCAAGTGAAAAATTGAACAATGTTTTAACATGGAATACACCACTGATATTTTCTAACTTTATTAAATATGAAGAACCTCAACACGACACAGGGACAGCTGATATACAAGATGATGAGGATACTAAATTTGACACTCACTTTGATACAAATAATATTCCGACAGATAATTCCGATTCAGAATCAGAAGTAAGTCTTCAAGTCTTGAAAGCaaaaagttttcaaaataagaatgatatcattctaaattcaaatatGGAACAGTTGTCGCAGTATATCGATGAATTTGTTGTCAAAGTAGAAGAAGATGTCAAAATAAAACCTAACGAAGACTATTTAAAAACCAAATGTGTCGTTttgaagaaggaagaatatgGCTTACGAAAAGATATGGTGAAGTGTCTAACTTGCGGAATATTGTCTATTAATAAGTCTGCGTTTATCGTCCATTACAGAAAACATTCAGGCGAAAAACCACATCATTGTTCACATTGTAAAATGAGATATTCGCAAGTCGGAACCCTCAATGCTCACATCAAAAAAATACATCCCAAAGCTTGGGAGAAGATGAAAAGCAAAGCCaagaaattaaagaaaatcaaagAAGAGGAGGCACTGCGAAATTCTCAGCTATCTAGCGAATCTCAACAGGGAGGGGCCGAACAAGGAGATAATAAGTCACGGTTGAGGGTCACCTGTGAAATATGCGGCAAAAGTTACTATCATAAGTACGCCTTAAACGTTCATATGCGAGTACACAATGTCGACAAACAAGTACAGTGCCCGTTCTGCCCGCAAAGATTCATACAGTCAGGTGACAGGTTGATACACATAAGAATACATCACACGGGAGAAAAACCTTTCATTTGTCACGTCTGCGCTAAATCATTTGCATCAGGAACTAACCTAAGAGTACATTTGTTGTCGCATTCTAATGAAAGAAAATTCAAATGTGACATTTGTCATAAAGGAATGAAAACAAAAGACAATCTAAAACGACATTTACTGGTGATGCATTCGCAAACGAAAGGAAAAGTTTGTCACATTTGTGGAAAAGCGTACGCCTTGACGTATAAATTAAATAACCACATGAAAATATGGCACACGAGAAGCGGCGATTGcgatatttgcaagaagacattcaaaaATATAGAATCACACATGAAGACTCACTCTCCGGAAAAAATGAAAGCGGACAAATATTTCAAATGTCACATGTGTCATAAATCGTTTAGCAAACAGAAGAACCTAATGGATCACGTTCAAAAACATCAAAACGAAAAGGCGGCATTTAAATGTACGTACGAAAATTGTAATTCAGCGTTTGCTAAGAAACGTGTTTTGGACTTTCACGTTTTGAAATATCATCTGAAACAAACGCCTCACACTTGTCAATTTTGTAACCGAGGATTTTATCGCAAGGGTGATCTCGGACAACACTTGAAAACTAGTCATGTCCCCTACACTTTAAATGtgccataa
- Protein Sequence
- MDQKDKLICRICLAECHRKVILFEYKNDVKYSDLIKEYIGIALINEENLPKGLCKQCQSDLNAAVRFISKIRVSSEKLNNVLTWNTPLIFSNFIKYEEPQHDTGTADIQDDEDTKFDTHFDTNNIPTDNSDSESEVSLQVLKAKSFQNKNDIILNSNMEQLSQYIDEFVVKVEEDVKIKPNEDYLKTKCVVLKKEEYGLRKDMVKCLTCGILSINKSAFIVHYRKHSGEKPHHCSHCKMRYSQVGTLNAHIKKIHPKAWEKMKSKAKKLKKIKEEEALRNSQLSSESQQGGAEQGDNKSRLRVTCEICGKSYYHKYALNVHMRVHNVDKQVQCPFCPQRFIQSGDRLIHIRIHHTGEKPFICHVCAKSFASGTNLRVHLLSHSNERKFKCDICHKGMKTKDNLKRHLLVMHSQTKGKVCHICGKAYALTYKLNNHMKIWHTRSGDCDICKKTFKNIESHMKTHSPEKMKADKYFKCHMCHKSFSKQKNLMDHVQKHQNEKAAFKCTYENCNSAFAKKRVLDFHVLKYHLKQTPHTCQFCNRGFYRKGDLGQHLKTSHVPYTLNVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179762;
- 90% Identity
- -
- 80% Identity
- -