Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756358.1:23588492-23591585[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.4e-07 2e-05 25.2 3.1 1 23 292 314 292 314 0.98

2 7 1.9e-06 8.4e-05 23.2 1.5 1 23 320 342 320 342 0.98

3 7 3e-06 0.00013 22.6 0.5 1 23 348 370 348 370 0.97

4 7 4.4e-07 2e-05 25.2 0.2 1 23 376 398 376 398 0.99

5 7 3e-07 1.4e-05 25.7 0.9 1 23 405 427 405 427 0.98

6 7 1.5e-05 0.00068 20.3 1.5 1 23 433 455 433 455 0.99

7 7 8.6 3.9e+02 2.2 2.0 1 20 569 589 569 591 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.4e-07	2e-05	25.2	3.1	1	23	292	314	292	314	0.98
2	7	1.9e-06	8.4e-05	23.2	1.5	1	23	320	342	320	342	0.98
3	7	3e-06	0.00013	22.6	0.5	1	23	348	370	348	370	0.97
4	7	4.4e-07	2e-05	25.2	0.2	1	23	376	398	376	398	0.99
5	7	3e-07	1.4e-05	25.7	0.9	1	23	405	427	405	427	0.98
6	7	1.5e-05	0.00068	20.3	1.5	1	23	433	455	433	455	0.99
7	7	8.6	3.9e+02	2.2	2.0	1	20	569	589	569	591	0.91

Sequence Information

Coding Sequence: atgccTCAATGCGCGGTTCAGGGATGTAAGGCTCGGGGAGTTCACACTTTTCCAAGGGACGAAGAAAGAAAAAAGCTTTGGGAAAGTGCGCTTGATGTGGTAGCCAGACCAACATCCAGAGTATGCGGTAAGCATTTCAAAGAAGATGATTACTTCGGCAAAAGTATTTATACAGATTGTGCACCTATGAAAAAATTCTTGAAGAAGACGGCGGTTCCAAGTCAATTTCTTTTTCCCGAAGTAAATATAGTGAGTCCATATTATGCGGTGAAAAATAATGACCAGtttgaaagaagaagaaaaagtgaaaaactaTTGGAAATGCTCCAGGAGAGAATAAATAGGCCCAGTACCTCCGCACCCGTTGTGACTCACAACATGGAAGGCAGAAACGGACAATATTACGAGGAATCTCCTATGGAATCTCAGGAAAGTACCTCCTCACGCAACAGTGCCCCGATGTTTAGCGGCGAAAACCTCACAATCACTAAATTAAAACAATCTCTACCATCAACAAACATGTTCAGAGTTGTGAGTGATCCATCTTCACTCACAATCACAAAGGTCCCGAGTGGAAGTTCAAAATCTGACTCACTCGAACAAATATTAAAGAAATCAAATAGTGGCAGAGCTGATCCAATGGAATCCTGTTCGTTGACCATCACTAAAGTCACAAATTACGCAAAGACTGAATCGAGCGATCAAACCTCGAGCAACGTTAAAGACTTTTCCGTCGGGAGTTTATCCAATAACGACTTGTCGTCGGACGCGTCCAAAATGGACGACGACTCTTACGATAGTGCTAGTTTTTATTCCGTCAACGGCGACAGTAATTTGAATTTGGATAATTCCAATCCGGACGACGTCAGAGCGTTCGAATGCGACGAATGCGGAAGAGCGTTTAAAAGATCCGATCATCTCCGAAAACACAAGACGACTCACTCCGGTCTGAAGCCGTACGAATGCGACATGTGCGATAAAAAATACACGCAATCTAGTAGTctgaaaatacacaaattaacTCACTCGCAAGCAAACAGATTCGCTTGTAACATTTGCCCTCGTACTTTTACGCAGTTATCCACTTTGAACGTACATAAAAAGATTCACACGACTAGCAAAATGTACGAGTGCCCCACGTGTGGGAAGGGGTATAATCACAGCGCTAATCTAGCCGTCCATCAGCGAGTCCACGCCCAGGATTTCAAATTCTTCACGTGCGACGTCTGCGGGAAGAACTTCACGCAAAAAGGAAACCTGAATACGCATAAAATGATTCATTCTAATATACGTCCGTACAAATGCAGTGTGTGCGAAAAGGAGTTCGTACAGAAGAATAATTACTTGCTGCATCTAAAGACGCACGAGAAAAACAGTACGTCTGGTCATGTCGTCGCAGCGCCGAGGAAACCCGTCATCACGAAGGTGAATCCGTCGTCAATAGAGGAAGCAGCGCCGGAGAGCGACAGCGAGAATGACGAAGAAGACGATACGTATTTAGACGACTTCGTCGTCGGAACAATGCACGTCAACGATACTAATAATACGTCTAAAACGGTGACGTCTACTCCGGAAAAGAGCAGTGAAAAGATTAATGTTATCGTTAAAGACGCTATTCCTAAATCTAGCAGAGAAACTAGTGTCCCCGTCACAAAGACTATTATCTCAAAACCCATCGTGAAGAATGTCGCGTCTTCAGTTCCTTTTGTCTGTATGGATTGCAACAATAAACCTTTCACGGAGAAGTGTAGACTTAGTAATCATAAGATGTACGTACTGTTTTGA
Protein Sequence: MPQCAVQGCKARGVHTFPRDEERKKLWESALDVVARPTSRVCGKHFKEDDYFGKSIYTDCAPMKKFLKKTAVPSQFLFPEVNIVSPYYAVKNNDQFERRRKSEKLLEMLQERINRPSTSAPVVTHNMEGRNGQYYEESPMESQESTSSRNSAPMFSGENLTITKLKQSLPSTNMFRVVSDPSSLTITKVPSGSSKSDSLEQILKKSNSGRADPMESCSLTITKVTNYAKTESSDQTSSNVKDFSVGSLSNNDLSSDASKMDDDSYDSASFYSVNGDSNLNLDNSNPDDVRAFECDECGRAFKRSDHLRKHKTTHSGLKPYECDMCDKKYTQSSSLKIHKLTHSQANRFACNICPRTFTQLSTLNVHKKIHTTSKMYECPTCGKGYNHSANLAVHQRVHAQDFKFFTCDVCGKNFTQKGNLNTHKMIHSNIRPYKCSVCEKEFVQKNNYLLHLKTHEKNSTSGHVVAAPRKPVITKVNPSSIEEAAPESDSENDEEDDTYLDDFVVGTMHVNDTNNTSKTVTSTPEKSSEKINVIVKDAIPKSSRETSVPVTKTIISKPIVKNVASSVPFVCMDCNNKPFTEKCRLSNHKMYVLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00299160;
90% Identity: iTF_00299160;
80% Identity: iTF_00299160;