Basic Information

Insect: Ceraclea dissimilis
Gene Symbol: -
Assembly: GCA_963576895.1
Location: OY756372.1:9942674-9944200[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.61 28 5.8 1.1 2 23 177 198 177 198 0.97

2 11 3.9e-05 0.0018 19.0 8.9 1 23 204 226 204 227 0.96

3 11 9.7e-06 0.00044 20.9 1.4 1 23 240 262 240 262 0.99

4 11 5.8e-06 0.00026 21.7 2.6 1 23 268 290 268 290 0.98

5 11 3.3e-06 0.00015 22.4 2.8 1 23 296 318 296 318 0.98

6 11 0.0012 0.056 14.3 0.9 1 23 324 346 324 346 0.96

7 11 2.9e-06 0.00013 22.6 1.5 1 23 352 375 352 375 0.97

8 11 0.53 24 6.1 4.6 2 23 381 399 381 399 0.94

9 11 0.00026 0.012 16.4 2.2 1 23 405 427 405 427 0.97

10 11 0.24 11 7.1 1.6 2 23 434 458 433 458 0.88

11 11 9.8e-06 0.00044 20.9 3.5 1 23 464 487 464 487 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.61	28	5.8	1.1	2	23	177	198	177	198	0.97
2	11	3.9e-05	0.0018	19.0	8.9	1	23	204	226	204	227	0.96
3	11	9.7e-06	0.00044	20.9	1.4	1	23	240	262	240	262	0.99
4	11	5.8e-06	0.00026	21.7	2.6	1	23	268	290	268	290	0.98
5	11	3.3e-06	0.00015	22.4	2.8	1	23	296	318	296	318	0.98
6	11	0.0012	0.056	14.3	0.9	1	23	324	346	324	346	0.96
7	11	2.9e-06	0.00013	22.6	1.5	1	23	352	375	352	375	0.97
8	11	0.53	24	6.1	4.6	2	23	381	399	381	399	0.94
9	11	0.00026	0.012	16.4	2.2	1	23	405	427	405	427	0.97
10	11	0.24	11	7.1	1.6	2	23	434	458	433	458	0.88
11	11	9.8e-06	0.00044	20.9	3.5	1	23	464	487	464	487	0.96

Sequence Information

Coding Sequence: ATGGATTCTAAGATTATTCAATTTGATTCTTTAAAGAACTGCCGAGTTTGTTTACTCAATGAATGTGAAATATACCCATTATTTGGTGCAGATAATAGCCCTCCTTACAATAAGATATTGATGGAGAGTGCTAATATAAACGTTGAGGAAAATGATGGTCTTCCTGTAGTAATATGTAGAGAATGTGTACATGAAATGTTAGAAGCCCACAAGTTTGTCCTTAAATGTCAGGAAACTGATAGAAACTTAAGATTAAGTTTATTGAAATCTATGGGAGAGATTAAAGAAGTAAAAGAATCCGATGGTGACTATGGCATGCCAATATTAGGTATCCTTGTGAAAGAAGAACCGGATATTTATGCGGATTATGATAATATGGATGAATGTAAACAGGAAGATTCTGATTGTAATGATAATGTGAGAGATAGTTATCATGGATATAAAACAAAACGTCTCAAGaaaaaaggtaaaatgaaaaaagatGGCAGAATCAAGAAAAATTACAGGAGATCAAATGATTACCCGAGGAAATGTACAGATTGTgaattaatattgaaatgtgAATCTGCCATGATAATTCACATGAGGAAGCATACAAACGAGCGACCATTCCAGTGTTCCCACTGTGGGGAGTGCTATAAGACTAAGAGTACCTTGAAGATACACACCAACAGACATCACAGAGCCCGGGAGGAGGTGGAGACACTTCCTAGGAACTTCACATGCGCCACGTGTGACAAGATGTTCTTCCGCAAGAAGGATATGATCATTCACATCAGGACACACACAGGGGAAACTCCTTACTGCTGCACATTCTGTCCCAAGGCTTTCAATCAACTCTCTTCTCTGATCCGCCACACTCGCATTCACACTGGGGAGAGACCGTACGAATGTCAACTGTGTCATAAACGCTTTCCAAGTTCGTCCGAGCTAACAACTCACAAGAGAGTACATTCCAATGAAAAGAAGTACACGTGTTTAATTTGTAATACGTTGTTTAAATCTAAAAATGCTCTGAGAACGCACAATTTAATTCATACAAACTTTAAAGACTTTGTTTGCGATAAATGTGGAATGTCCTTCAATAAGAAAGGTAATTTGAAGTCTCATTACAACAGAATGCATTCAGATAGAGCGGGACAGTGTTGCGTGTGTAATAAGAAGTTCTCCAAGTTAGATGATCACATGCGCACACACACTGGGGAGACTCCATTCCAATGTGACTTGTGCAATAAGAAGTTTAGTTTGAAGTCTCGTCTCCTCTCGCACATTACATATCATAAGGGATTAGATAAACACGCCTGTCAGTTGGACGGCTGTACTAAGAAATTCCCTAAACAAAGTATGTTAACATTCCACGTACTGAAATACCACAAGAAACAAACTCCATATATATGTAAACATTGTAACAGAGGTTTCTACAGATTATCCGACTTGAAGAGACATCTTAAGTTGAACCATTCTGATCAACCAGATATCATTCAAGACATTAAAGATGCAGTTTCAATTAATAAACGTGATTCCTAG
Protein Sequence: MDSKIIQFDSLKNCRVCLLNECEIYPLFGADNSPPYNKILMESANINVEENDGLPVVICRECVHEMLEAHKFVLKCQETDRNLRLSLLKSMGEIKEVKESDGDYGMPILGILVKEEPDIYADYDNMDECKQEDSDCNDNVRDSYHGYKTKRLKKKGKMKKDGRIKKNYRRSNDYPRKCTDCELILKCESAMIIHMRKHTNERPFQCSHCGECYKTKSTLKIHTNRHHRAREEVETLPRNFTCATCDKMFFRKKDMIIHIRTHTGETPYCCTFCPKAFNQLSSLIRHTRIHTGERPYECQLCHKRFPSSSELTTHKRVHSNEKKYTCLICNTLFKSKNALRTHNLIHTNFKDFVCDKCGMSFNKKGNLKSHYNRMHSDRAGQCCVCNKKFSKLDDHMRTHTGETPFQCDLCNKKFSLKSRLLSHITYHKGLDKHACQLDGCTKKFPKQSMLTFHVLKYHKKQTPYICKHCNRGFYRLSDLKRHLKLNHSDQPDIIQDIKDAVSINKRDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -