Cdis014366.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963576895.1
- Location
- OY756372.1:6015717-6017168[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0041 0.19 12.7 0.6 2 23 161 182 160 182 0.96 2 11 0.00017 0.0076 17.0 2.7 1 23 188 211 188 211 0.96 3 11 3.2e-07 1.4e-05 25.6 1.1 1 23 226 248 226 248 0.98 4 11 4e-07 1.8e-05 25.3 1.4 1 23 254 276 254 276 0.99 5 11 0.00016 0.0071 17.1 2.2 1 23 282 304 282 304 0.96 6 11 3.2e-05 0.0015 19.3 0.1 1 23 310 332 310 332 0.97 7 11 0.00015 0.0067 17.2 0.3 1 23 338 361 338 361 0.96 8 11 8.9 4e+02 2.2 4.0 2 23 367 385 367 385 0.85 9 11 0.002 0.088 13.7 4.9 1 23 391 413 391 413 0.94 10 11 0.023 1.1 10.3 0.5 1 23 419 443 419 443 0.91 11 11 0.00029 0.013 16.3 5.9 1 23 449 472 449 472 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCTGAAGCGATGTTCATCAAATGCAGAATATGTTTGAATGAATCCGAATACTTGTATCCAATATTTGATTCCGATTTTATCTCCAATATTAGTGAGAAAATCGAGAAATATTCGGGAATTAAAATATCTCAAGAAGACTGTTTCCCACAAAGTATTTGTAGGGAGTGTATTGAGGAATTGAGAGGTATCGAAAAATTTGTTGAGAAATGTCAGCAGTCCGATGAAATTTTAAGAGAGGAAGTAGAAATTAAAGTGAAAGATGAAGTTGATCATCTTAACGAAGACGACTATTGGGTGGATGTCAAAATGGAAGAAGAGGATGACTTGCCAATCATCAAATTTGAAGAGTGTCATAGAAAGGAAATTAAAATGATAAGAAAACCACATAAAAGTAAGCATAAATTAAAACAGAAAGTAAagaggaaaaatgaaaaaacaagtAAAACTCCTAAGAAAGAGTCAAGCGGTGCTTGTGTGTGTAATACGTGTGGTCTACAACTAAAGAGTCGCTCAGCTATGGAAATTCACTGGAGAGTCCATACTGGGGAGAAACCATTTGAATGTACAGTGTGCTTGAAGAGGTTTTCACAGAAGAATACTTTACGTACACACACAGAGAGACGACACAACACCAACTTACAATACTCACATTGCACGCCAGACAGAAGATTCTATTGTGAGACGTGCGGGAAAGCTTTCAAAAGCAGAACTAGCTTAAAAATACACTTGAGAGTACACAACGATGAACGTCCTTATAAATGCAATGAATGTGATAGGAGATTCACTCAGTTAGGATCTCTCTCCGTGCATCAGCGGAGACACAGAGGTGAACGCCCTTACTCCTGTGATATTTGCCAAAAAACCTTTGTAGAAATGACTCATCTAAAACGACACAGTAGCGTACACAGCGACGCCAGACCTTACATTTGCAGCATATGCGGTAAAGGTGTCAAATCCCCATTCGCTCTTAAGCAACATCTTAAATTACATTCAAACAGTAAAGAACATGTGTGCGATAAGTGTGGCATGTCCTTTACGATAAAAGGAAGTCTCGATTCGCATGTTCGAGTTGTACACTCTGAAAAATCTGGACAGTgcttaatttgtaataaaatctgTTCTAATCTTCACGATCACATGACTCTACATAGCGGAGAAAAACCCCATTGTTGTGGAGTTTGTAATAAGCGTTTCTCAAGGAAAAGAGGTCTAATAATACATTCCAAGCAACACACTGAAGAAGGGAAATATCAGTGTAGTGTCCCAGATTGTGGGAAAACATTCTACGCTCAATGGGTTCTAGAATGTCATATTCTAAAACACACTGGAAATACTCCATTTGTTTGTAGATTGTGTAAGAAAGGATTTGTGAGGGTTTGTCATTTAACTAAACACATGAAGACTAATCATCCCAATGACGAAATACAAAGTAACACTATTACATGA
- Protein Sequence
- MSSEAMFIKCRICLNESEYLYPIFDSDFISNISEKIEKYSGIKISQEDCFPQSICRECIEELRGIEKFVEKCQQSDEILREEVEIKVKDEVDHLNEDDYWVDVKMEEEDDLPIIKFEECHRKEIKMIRKPHKSKHKLKQKVKRKNEKTSKTPKKESSGACVCNTCGLQLKSRSAMEIHWRVHTGEKPFECTVCLKRFSQKNTLRTHTERRHNTNLQYSHCTPDRRFYCETCGKAFKSRTSLKIHLRVHNDERPYKCNECDRRFTQLGSLSVHQRRHRGERPYSCDICQKTFVEMTHLKRHSSVHSDARPYICSICGKGVKSPFALKQHLKLHSNSKEHVCDKCGMSFTIKGSLDSHVRVVHSEKSGQCLICNKICSNLHDHMTLHSGEKPHCCGVCNKRFSRKRGLIIHSKQHTEEGKYQCSVPDCGKTFYAQWVLECHILKHTGNTPFVCRLCKKGFVRVCHLTKHMKTNHPNDEIQSNTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -