Cdis019476.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ceraclea dissimilis
Gene Symbol
-
Assembly
GCA_963576895.1
Location
OY756378.1:9676978-9679777[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.11 4.8 8.2 0.5 1 23 170 192 170 192 0.98
2 16 0.012 0.56 11.2 2.4 1 23 198 221 198 221 0.97
3 16 0.0015 0.067 14.1 2.5 1 23 320 342 320 342 0.98
4 16 0.017 0.77 10.7 1.1 1 23 348 371 348 371 0.95
5 16 0.019 0.87 10.6 0.3 1 23 383 405 383 405 0.98
6 16 0.0007 0.031 15.1 2.2 2 23 410 431 409 431 0.97
7 16 5.9e-06 0.00026 21.6 0.4 1 23 437 460 437 460 0.98
8 16 0.23 10 7.2 0.3 3 23 486 506 484 506 0.96
9 16 6.4 2.9e+02 2.6 5.1 1 23 512 535 512 536 0.94
10 16 0.00067 0.03 15.2 0.3 3 23 553 573 552 573 0.99
11 16 0.0004 0.018 15.9 0.7 1 20 579 598 579 601 0.92
12 16 0.0073 0.33 11.9 1.1 1 23 607 630 607 630 0.97
13 16 7.7e-05 0.0035 18.1 1.2 2 23 638 659 637 659 0.97
14 16 8.4e-05 0.0038 18.0 0.1 1 23 665 687 665 687 0.96
15 16 0.011 0.51 11.3 0.9 1 23 693 715 693 715 0.98
16 16 0.0084 0.38 11.7 3.2 1 23 721 744 721 744 0.95

Sequence Information

Coding Sequence
ATGGAGTGTagattttgtttgaaaaaatcTCCGAAACCAAAACACAATATCCACGAGCTGGATTTCAAGATTCTCCGTATTATTGAAGAAATGTTAAAGATTAGCAAGGAGGATGAATTGCCTAAACTAATTTGCAAATATTGTGTAACTAAACTAAAAACTATGGAGAACTTCATTAGGCAATGTGAGGAGAGTGATGCATACTTTAGAAACAATATAACGTTCTCTATTAAACATGAACCTGAATTGTTTCTATCAGAGTTTGATGATCTCATTGAGATTAATACAGATACGGCAGTAGAGTTGGGTCAAGTGGAAATACAATATACAGTGGCTAATGAAGAATCTCAAATACAAACATGTAATGGAAGTGAAATAGATAATCTAGAATGTTCCGACAATGAAGATAGATTAGATGTAGGAGAAGATAATATTGTGGAAGATGCAACTAATTCTAACATAGTTGAGAGTAACGAATTTAATGAAAGTAGTTCTGATAAGACAACATATTCCTGCTCGCATTGTCCAGCAGAATATGAGGAGAAAAATCTGTACgatttacatattaaaatacacgATAATAAAAAACAGTATCCTTGTCATTTTTGTCCGATTGTATTTGGCCATAGGATGAGTCGAATAAGACACATGGAGAAATCTCATAAAGAAGCTTGGGATATTAAGCGTAAGAAAGGAAAGAGTTCAAGCGAACTGGGAACTGTTACAAAACAAGTGGATGAGCAGTTGTTGCCTAATGTCAATATTACTAAAGAAGTATTAGATACTCCAGGAGATAATGTTGTAGAAGAGGTGACTAGTAATGATATAACAGAACCTTGGGAAGAAGCCAAATCTGTTGAACTCGCTCCAAATAGTTCCAACAAGAGCTTGGATGATAATGTAACCCTTAAGGAAGTAAGGAATACAATGACTGATATTCAGACACATGGGGATGTTCACAAATGTTCTCTTTGTCCCGCTAAATAcaaaaacagacaacaacttaaGATGCATGttaaaatacacaatttttCTACAATATTCACATGTCAATATTGTCAGATAGTCTTTGGATCGAAATCAGGTCGTTATAATCATCAATTATTGTATCATTCGGGGAGAGAGAACCTCGAGAAAGGCAAATCATACGAGTGTCCGGATTGTTTCTGGACGTGGGATAATGTAACGGATTATAAACGTCATCTTAAAAGTCACGCTAGTCGGCTGAAATGTCACCTGTGTCCAGCAACATATAAAAGTCGTAAAATGTTAAAACTGCATCTTAAAATACAtgatctgaaaaaaatatatacctgtgAGTTCTGTCAAATTGTTTTTAGTAGAGCGTCTAGTCTTAATGAGCATGTTAGAAAATGGCATGAGGACAAAGTTTTGAGAACAACAGCCAAAAAGAGAAAAGAAGAATTAAGATCCGCTACAAAGCAAGTGCTTGCATGTTCGCAATGTCCGGCAGTTTACAAAAAAATCCTCGATTTTAAGCGCCATTCCAAAGTACACGAGAGCGatgtaatattttcttgttattattgTGAGGCAATCTTTGATTCAAAGAAAACACATTTACGTCATATGGTAAGAAAACACCACGCTGATGTTAAGAAGAATAAGACAGCATCGTACGATAGTCCTAAGTTATGTTCCATATGCGGTAAAGTTTACCGAAAAGGAGATTCGTATGAAAGCCATGTGAAGACACACTCTACAGAAACAAATTATCAATGTGATATATGCTCCAAAACGTTTAAAACTAAGAAAGCTATTGGGAGGCATATACCCAGGCATTCGAAACTTCGACCATACAGCTGTAATATTTGCTCAAAATCTTATCCAGAAGCATATCTCAGGAGCCGGCACGTAAAGAGAAAACATCTCAATGTTCAACCGACTATTCCTTGTCATATTTGTAACaggaaattttatatacaagCAGATTTGAAGAGTCATTTGCGTtctcacactggtgaaaaaagATTTGAATGCGACATTTGTGGCAAGGGATTCCCGATCCTTCAATCTTTAACCAAACATATGGCGTTTCATTCTGACGACAAACCATTCTCGTGCAGTTTTTGTCCCGCAACATTTAAATTGACGGAATATGTAAAACGACACGAAAGGATTCATACGGGCGAACGACCGTTTAAATGTCCGATTTGTCTCAAAGGATTCGCTCAACTTTGTAACATGAAAAGTCACTTTAAATATAATCACAAAGAATTGGACTACAAggaagaaatgaagaaatataaAACGTCGCTGAAAGAAAATTCCAATGAGATAATCAGCTAA
Protein Sequence
MECRFCLKKSPKPKHNIHELDFKILRIIEEMLKISKEDELPKLICKYCVTKLKTMENFIRQCEESDAYFRNNITFSIKHEPELFLSEFDDLIEINTDTAVELGQVEIQYTVANEESQIQTCNGSEIDNLECSDNEDRLDVGEDNIVEDATNSNIVESNEFNESSSDKTTYSCSHCPAEYEEKNLYDLHIKIHDNKKQYPCHFCPIVFGHRMSRIRHMEKSHKEAWDIKRKKGKSSSELGTVTKQVDEQLLPNVNITKEVLDTPGDNVVEEVTSNDITEPWEEAKSVELAPNSSNKSLDDNVTLKEVRNTMTDIQTHGDVHKCSLCPAKYKNRQQLKMHVKIHNFSTIFTCQYCQIVFGSKSGRYNHQLLYHSGRENLEKGKSYECPDCFWTWDNVTDYKRHLKSHASRLKCHLCPATYKSRKMLKLHLKIHDLKKIYTCEFCQIVFSRASSLNEHVRKWHEDKVLRTTAKKRKEELRSATKQVLACSQCPAVYKKILDFKRHSKVHESDVIFSCYYCEAIFDSKKTHLRHMVRKHHADVKKNKTASYDSPKLCSICGKVYRKGDSYESHVKTHSTETNYQCDICSKTFKTKKAIGRHIPRHSKLRPYSCNICSKSYPEAYLRSRHVKRKHLNVQPTIPCHICNRKFYIQADLKSHLRSHTGEKRFECDICGKGFPILQSLTKHMAFHSDDKPFSCSFCPATFKLTEYVKRHERIHTGERPFKCPICLKGFAQLCNMKSHFKYNHKELDYKEEMKKYKTSLKENSNEIIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-