Cdis014724.1
Basic Information
- Insect
- Ceraclea dissimilis
- Gene Symbol
- -
- Assembly
- GCA_963576895.1
- Location
- OY756372.1:15719213-15725536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.023 1 10.4 0.4 1 20 347 366 347 368 0.95 2 17 0.0034 0.15 12.9 2.3 2 23 389 410 388 410 0.97 3 17 1 47 5.1 0.3 6 21 505 520 501 521 0.89 4 17 4.8e-05 0.0021 18.8 3.8 1 23 528 550 528 550 0.98 5 17 0.029 1.3 10.0 0.3 1 20 580 599 580 601 0.96 6 17 0.0018 0.082 13.8 0.5 2 23 637 658 636 658 0.96 7 17 0.62 28 5.8 0.8 5 23 667 686 664 686 0.91 8 17 0.21 9.5 7.3 0.2 3 23 694 713 692 713 0.91 9 17 1.9e-06 8.7e-05 23.2 3.7 1 23 719 741 719 741 0.99 10 17 0.00072 0.033 15.1 0.3 2 23 748 769 747 769 0.97 11 17 1.7 76 4.5 0.1 1 20 799 818 799 820 0.95 12 17 0.018 0.79 10.7 2.0 1 23 857 879 857 879 0.97 13 17 0.11 4.7 8.2 1.4 5 23 888 907 886 907 0.93 14 17 0.59 27 5.9 0.2 3 23 915 934 913 934 0.94 15 17 5.8e-07 2.6e-05 24.8 1.9 1 23 940 962 940 962 0.99 16 17 0.00015 0.0067 17.2 0.4 2 23 969 990 968 990 0.97 17 17 0.0048 0.22 12.5 0.3 1 23 996 1018 996 1018 0.97
Sequence Information
- Coding Sequence
- ATGCCTTGCTGTGCGATAAGGTCTTGCAGAATTCGAAGAAACTCGTTGGAAGCCAAGAGGGCTAATATATCATTTCATATATTTCCTAAGGACCCAGAgaagagattggaatgggtcaGTAGGATTAATCGCCCCGGGTGGGAGCCTAATGACGCGACCGTGTTGTGTTCCAGACATTTCACAACATTTGATTTCCTTGACACTACCAAAGGTAACAAGTTGCTGAAAGGATCCGTTCCAACACTCCATCTCAATGATCCAatcGATGAAAAAACAATGGCATCGAAAGCTAAAGAGAGGAAAACTAGAAAACCCAAAGCTAAATATGTAAATGTGATGCTCCAGAATGCAAGCAAGATGGAGGATAAGATACCTCTTATGGATATTAAAGTTGAACCaagtattgtaggGGACCAACCAACATCTGatagtgaaataatgaaccaaCAACGCACTGTAATAGCTGATATTATAAAGAGTATTATGCACTCACTGGATTTACTCATCAAATCAGATCCTGACAATATTAGGAGTGCCAATGTCAGAGACAAGATTATTCTGGCTTTGTTTTCTTATCAAGACATCATCGAAGAGAAAGAAGTAAATTTGACTTCATATAAAGAAGTAGATATATTTGATAATAGTAATAATCTCAAGGAGATTGATATTGTTTATAATGATATTAAAGATGATAATTCTGAAGAAGATTTTAATCACTTTAATGATGGTGACTCTCATAGTGATTTTGAAGATCAAACGTTTCTCTCTAATCTCAGAAATAAGGAGATAAGTCTGTTGGAAAAGGTTAAAGTCAAAAGAAAAAAGTCATCAGAGAAACGCAAGTCTGtaaagaaattaaaagaaaagacTAGTAAAAGCCGTAAAGTTAAAAAGAAGCAGTTAACATCAAAGAGAAAAGCCGCCACAGAAGCTACGGACGAAGGTGAAGAAATGATTCCCGAAGATGAAAACGATGTCCCCCATGTAAAGACAGAGTATAGTAAGGAGAATCTAGGGTTTGAGTCaacagTTCCTCGATATGTTTGTGATATTTGTGATGTGACTGTAATAAGTGAACATCATCTCACTGTTCACAAACATTTATGTAAAAgaagacattattattatggtaatcCATTGCTAGAGGAATATTGGAACAATATCAAATGTCCATTGTGTGATGTGAGGTGTACACACAGAGGGAACCTAGGAAGACATTACGTAACGCATAGAGTGAAAGACATTGAGGCAGCATTAGCATCTCTCAAAGAGAAAGGATTGAATCCAGAGAATCCTGAAGGAAATATGAAACTATTAAATGATTTCATACAAGAGTTTGAATACAAAGAGAAAGTAGATGGTGATGAATTATCTCTACAAAGTGGTAATacaatacaagtccatacagAAGGAAATATTTGTAAGAAACCCTCCATAGATGACTATGTGAAATTTAATCTCAAGAAGATAGTATATGATGTTGATATTAACAAGGAATTATTCTGTTTCCCGTGTGACATTATGTTTCAAACTAAACAGGACTTGGAGGAACACAGGAAGAAAATCAATGATACAGATGCATTTGTATGTAATCATTGTGATAAAACGTTTGATACTCCGACTAGATTAATCCACCATGCCAAGACGCACACAGGTTCATACAATCGCAAGAGTTTATATTTGAATTATAAACCAGAGGATACTGAGGGCTGTCCGCGACAGATCGATTATAAAGTATACgtttgtaaatattgtttagCGATATTTGTACAGGAGTCGTCGTTACATTCTCACTTAGGTTATTACAAGAAACACTTGGAGTGCTACACGAAGATTAACAAATCTCCTAGGGGGTCTGTCACGAAGAAGACTCCCCCCGGAATAAAAAGAACGGCAGACGATAAACTGCAGTGTAATAAGTGCGATAAGTCTTACGGAAACTATTATCTTTTCTTGGAACATTTAGCTTCGCATTCGGAGATATTGAAATATCAGTGCGAATGCGGGAAAGGATTCAAATCGAAACAGAGATTAAGATTTCATATAAACTTAGTGCACGCTAAAAAGTTTGAAGTGATTTGCGAAGTGTGCGGATTgaagatattatatttcaatctGCGTAGACATATGAAAGTGCATTCTAGTCTTAAACCGTACAAATGttcttattgtaataaaacgttCAAGTATAAGGAGTCTGTGACTTCGCACATTAGAACTCATACGCACGAGAAACCGTGGCAATGTCAGTATTGCGGAATGGCGTTCTCGGAGAAGAGaagatataatattcatattaatatacACGAAGGACTATATAATGAAGACAGTTTATATCTTCACAACAAGCTAGAAGACACAGAGAGCTGCCCACGTCAAATGGATTACAAAATATACGCTTGCAAGCGCTGTTTGTCCATGTATGTCCGAGAGGCTGCACTCCGTACGCACATAACATTCTACGGCAAACATTACGTCTGTTACACTCAAAAGGAAAAACCTAAAATGAAGAGGCGAAGAAAACCACCAGTCTTACCACCCGGTACGGTAAAGACTGATGATGGGAAATATCACTGCAACCAATGCGAGAAAATATACACCAATTACTATTTGTTCTTAGAGCATGTGGCATCTCATTCTGACGTGTCGCAATTCCGATGTGAATGCGGCAAAGGCttcaaaacaaaaaagaaattaaagttTCATATCAATCTCGTTCACGATAAAAAGTTTGATGTGATATGCGAAGTGTGCGGGCTGAAGGTGTTGTACTCGAGTTTGAGACGACACAGAAAGGGACATTCTAGCCTCAAACCATTCAAGTGTGCGTATTGTAACAAGTCTTTCAAGTATAAAGATGCTCTGAAGGGACATATCCGTACTCATACTCAAGAGAAATTGTGGAAATGTCAATATTGTGGTGTGTCATTTTCAGAGAAGCGAGGTTACAATACACATATTAATATTCACGAAGGTAAAACGCCGTATAAATGTTCTCAGTGTCCCAGTGCTTTTGTATCTAAACTCAAATTAAATGCACATCTTACAGAACACACCGATTGTAGAAATTCcacgtaa
- Protein Sequence
- MPCCAIRSCRIRRNSLEAKRANISFHIFPKDPEKRLEWVSRINRPGWEPNDATVLCSRHFTTFDFLDTTKGNKLLKGSVPTLHLNDPIDEKTMASKAKERKTRKPKAKYVNVMLQNASKMEDKIPLMDIKVEPSIVGDQPTSDSEIMNQQRTVIADIIKSIMHSLDLLIKSDPDNIRSANVRDKIILALFSYQDIIEEKEVNLTSYKEVDIFDNSNNLKEIDIVYNDIKDDNSEEDFNHFNDGDSHSDFEDQTFLSNLRNKEISLLEKVKVKRKKSSEKRKSVKKLKEKTSKSRKVKKKQLTSKRKAATEATDEGEEMIPEDENDVPHVKTEYSKENLGFESTVPRYVCDICDVTVISEHHLTVHKHLCKRRHYYYGNPLLEEYWNNIKCPLCDVRCTHRGNLGRHYVTHRVKDIEAALASLKEKGLNPENPEGNMKLLNDFIQEFEYKEKVDGDELSLQSGNTIQVHTEGNICKKPSIDDYVKFNLKKIVYDVDINKELFCFPCDIMFQTKQDLEEHRKKINDTDAFVCNHCDKTFDTPTRLIHHAKTHTGSYNRKSLYLNYKPEDTEGCPRQIDYKVYVCKYCLAIFVQESSLHSHLGYYKKHLECYTKINKSPRGSVTKKTPPGIKRTADDKLQCNKCDKSYGNYYLFLEHLASHSEILKYQCECGKGFKSKQRLRFHINLVHAKKFEVICEVCGLKILYFNLRRHMKVHSSLKPYKCSYCNKTFKYKESVTSHIRTHTHEKPWQCQYCGMAFSEKRRYNIHINIHEGLYNEDSLYLHNKLEDTESCPRQMDYKIYACKRCLSMYVREAALRTHITFYGKHYVCYTQKEKPKMKRRRKPPVLPPGTVKTDDGKYHCNQCEKIYTNYYLFLEHVASHSDVSQFRCECGKGFKTKKKLKFHINLVHDKKFDVICEVCGLKVLYSSLRRHRKGHSSLKPFKCAYCNKSFKYKDALKGHIRTHTQEKLWKCQYCGVSFSEKRGYNTHINIHEGKTPYKCSQCPSAFVSKLKLNAHLTEHTDCRNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00299140;
- 90% Identity
- iTF_00299140;
- 80% Identity
- iTF_00299140;